Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13b19
(436 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 142 2e-35
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 140 8e-35
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 31 0.058
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb... 28 0.71
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 27 0.94
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ... 27 1.2
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 27 1.6
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 26 2.9
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 26 2.9
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 25 3.8
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 25 5.0
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 5.0
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 25 6.7
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 25 6.7
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 24 8.8
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 24 8.8
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 24 8.8
SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb... 24 8.8
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 142 bits (345), Expect = 2e-35
Identities = 63/126 (50%), Positives = 89/126 (70%), Gaps = 2/126 (1%)
Frame = -1
Query: 397 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 218
M KI+KPGKV L+ GR+AG+K ++++ D+G+ P+GHA VAG++RYP KV K MG
Sbjct: 1 MVKILKPGKVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60
Query: 217 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEE 44
+I +RS++KPF+KVVNYNHLMPTRY ++ K +A K+P +R R + FEE
Sbjct: 61 RIARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSAARKTVKKTFEE 120
Query: 43 RYKSGK 26
+Y+SGK
Sbjct: 121 KYQSGK 126
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 140 bits (339), Expect = 8e-35
Identities = 61/126 (48%), Positives = 89/126 (70%), Gaps = 2/126 (1%)
Frame = -1
Query: 397 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 218
M KI+KPGKV LV GR+AG+K ++++N D+G+ P+GHA VAG++RYP KV K MG
Sbjct: 1 MVKILKPGKVALVTRGRFAGKKVVILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60
Query: 217 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEE 44
+I KRS++KPF+KV+NYNHLMPTRY ++ K + +P++R + + FEE
Sbjct: 61 RIAKRSRVKPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSAAKKTVKNTFEE 120
Query: 43 RYKSGK 26
+Y++GK
Sbjct: 121 KYQTGK 126
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 31.5 bits (68), Expect = 0.058
Identities = 10/34 (29%), Positives = 23/34 (67%)
Frame = -1
Query: 406 PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDE 305
P+K+ + PG V ++L+GR+ G++ +V+ ++
Sbjct: 45 PTKLRASLAPGTVCILLAGRFRGKRVVVLSQLED 78
>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 225
Score = 27.9 bits (59), Expect = 0.71
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -1
Query: 226 GKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDF-SFEKFSAKDLKDP 92
G + I R K P K+VNYNH + + +F K D+ DP
Sbjct: 28 GNHWIFARFKFYPLNKIVNYNHFHSSSCQSEAKNFYKQFEGDISDP 73
>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 27.5 bits (58), Expect = 0.94
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 391 KIMKPGKVVLVLSGRYAGRKAIVVKNYD 308
+ ++ G+VVLV G Y G+ A++V D
Sbjct: 6 RYVEVGRVVLVTKGEYTGKLAVIVDIVD 33
>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 622
Score = 27.1 bits (57), Expect = 1.2
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Frame = +2
Query: 143 ITCWHQVIIVYNL-HERLYLGPLVDFILSHPLVHFPG-VPVDTSDESMPVRLVGGTFVVI 316
+ W + +I + H +L + P+ F H + FP V V TS + +
Sbjct: 485 LALWKKQVIFSKIGHPKLLVMPISSF---HCVQRFPDLVCVQTSTAETFLSVDRELTTYD 541
Query: 317 LDYDSLATRVPAT*DQHYFTRLHYLTHLGGIFPLLVDIE 433
L+ L P+ Q++ +H+L +G +FP LV ++
Sbjct: 542 LNTIKLLNTAPSRTAQNWLFIMHHLEIVGYLFPHLVHLD 580
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 26.6 bits (56), Expect = 1.6
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +3
Query: 291 LSEVPSS*FLTTIALRPAYRPLKTSTTLPGFIILPILEGYSLY 419
L E+P + F T+ AY P S T+ G + G +Y
Sbjct: 689 LEEIPYNKFFKTVEKNEAYNPSSKSATIDGLQRYTSMIGNQIY 731
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 25.8 bits (54), Expect = 2.9
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 197 LGPLVDFILSHPLVHFPGVPVDTSDESMPVRLVGGTFV 310
LGP+ + + L HFP DT + S P GGT V
Sbjct: 1364 LGPIGETFEVNGLSHFPSDIEDTIERSHPRIARGGTAV 1401
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 25.8 bits (54), Expect = 2.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 95 VFQVFCAEFFKAEVNCITCWHQVIIVYNLHERLY 196
V+QVFC F A+ I +Q++ V NL E Y
Sbjct: 315 VYQVFCTNFPNAQQLIIDNQNQLLKVANLLEPSY 348
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.4 bits (53), Expect = 3.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 362 QHYFTRLHYLTHLGGIFPLLVD 427
Q YFT ++ G +FP +VD
Sbjct: 803 QQYFTAIYKFEGCGSVFPFVVD 824
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 25.0 bits (52), Expect = 5.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 244 KVHKRMGKNKIHKRSKIKPFVKVV 173
K+ KR+G I SK+ P VK+V
Sbjct: 205 KIAKRIGFTDISLSSKLTPMVKIV 228
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 25.0 bits (52), Expect = 5.0
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -1
Query: 139 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEER 41
VD++ E+F DP+ + NT ++ E+R
Sbjct: 821 VDYAIERFCQFTALDPSSVPGTQLNTAIKVEDR 853
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 24.6 bits (51), Expect = 6.7
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = -1
Query: 196 IKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKRKKLRFNTR 59
+ PF K Y H + T + S KF + K K R +TR
Sbjct: 39 VSPFFKKERYKHHLETNVSSHQSATKFIEPEPSPTKKTKLTRRDTR 84
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 24.6 bits (51), Expect = 6.7
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +1
Query: 139 LYNVLASSDYSLQPSRKALSWTSCGFY 219
LY L+ S + P R W SC FY
Sbjct: 246 LYRGLSVSMLKVAPGRYECLWLSCHFY 272
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 24.2 bits (50), Expect = 8.8
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = +2
Query: 122 FKAEVNCITCWHQVIIVYNLHERLYLGPLVDFILSH 229
F V I C H V + + ++ GP ++F++ H
Sbjct: 90 FDNRVGVIECIHLVNFMCHDSLKINFGPRINFVIGH 125
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 24.2 bits (50), Expect = 8.8
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +2
Query: 110 CAEFFKAEVNCITCWHQVIIVYNLHERLYLGPLVDFILSHP 232
CA+F E N + WH YNL R Y + D + P
Sbjct: 772 CAKFSLKETNKTSFWHS---SYNLFNRQYHVDMPDNVSDLP 809
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 24.2 bits (50), Expect = 8.8
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +2
Query: 113 AEFFKAEVNCITCWHQVIIVYNLHE 187
A FF + +C++ + ++ YN+HE
Sbjct: 69 APFFTKQNSCLSRFRELAQTYNIHE 93
>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 24.2 bits (50), Expect = 8.8
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -1
Query: 409 YPSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYD 308
Y ++ G + GK+V+++SG A K+ + + D
Sbjct: 40 YSTESGMLFHAGKLVIIMSGLPARGKSNIAVSID 73
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,883,717
Number of Sequences: 5004
Number of extensions: 38241
Number of successful extensions: 137
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -