Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13b14
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    28   1.4  
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    27   2.4  
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos...    27   3.2  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    26   5.6  

>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 389 LYDFFVDGKHFRHEFRVRHDVRQTVKDGEQLPVPKTKLFIALLD 520
           LYD+FV     R+ + V H    +VKD   +P+P       LLD
Sbjct: 564 LYDYFVK----RNRYGVLHSKSNSVKDAYIIPMPSGNSVPELLD 603


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +2

Query: 371 LVSRGELYDFFVDGKHFRHEFR-VRHDVRQTVKDGEQLPVPK-TKLFIALLDFFDYL 535
           L+ R +LY  F D  HFRH+ +  R+    +    E+  VP  +KL   L+ F  YL
Sbjct: 344 LIER-DLYRTFPDNVHFRHKSKHSRNSSDASEHSSEEPDVPMISKLRRVLMTFATYL 399


>SPBP35G2.05c |cki2||serine/threonine protein kinase
           Cki2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -1

Query: 312 VNHIFLY*LYITFSYTYLKLT--QQKYHKCNINKQHLCVSHLC 190
           + H+F+Y L  +  +  LK    + KY K +  KQ   +S LC
Sbjct: 204 LGHVFMYFLRGSLPWQGLKAANNKHKYEKISEKKQSTSISELC 246


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 47  LTITVMTVSMSQSKRDICQKICDGII 124
           +T+ V ++++S SKR +CQ    GII
Sbjct: 138 VTLPVTSLAISNSKRIVCQGHAGGII 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,237,352
Number of Sequences: 5004
Number of extensions: 39506
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)