Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13b14
         (669 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0493 - 17770723-17770758,17770772-17770996,17771051-177720...    29   4.4  
04_04_1408 + 33349232-33349450,33349715-33349782,33349853-333498...    28   5.9  
03_05_0267 - 22538631-22539452                                         28   5.9  
03_03_0255 + 15894081-15894356,15894565-15894635,15894746-158947...    28   5.9  

>08_02_0493 -
           17770723-17770758,17770772-17770996,17771051-17772033,
           17772196-17772720,17772801-17772990
          Length = 652

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 26/96 (27%), Positives = 42/96 (43%)
 Frame = -3

Query: 643 LKLKDQEFTMXYDSTSGKQRKKFKFSVFLELQKIPDXXXXXXEQCNEQLRLRDGELLSIL 464
           L L D+EF   +D   G +R + + S+  +L  IP+       +   ++R  D + L +L
Sbjct: 494 LNLSDEEFDGLHDDVIGVERVQSQESLVAKLSAIPEAAVSPSRR--SKIRASDSDQL-VL 550

Query: 463 NRLANVMADAEFMAEVLAVNEKIVELSAAH*SNNNV 356
            R   + AD     E L ++  I  L     S N V
Sbjct: 551 QRAEKLKADKNL--ENLQISASIKNLGIITSSPNVV 584


>04_04_1408 +
           33349232-33349450,33349715-33349782,33349853-33349881,
           33349973-33350169,33350247-33350459,33350621-33350755,
           33351122-33351238,33351332-33351385,33351574-33351690,
           33352199-33352292,33352575-33352585
          Length = 417

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/47 (40%), Positives = 25/47 (53%)
 Frame = +1

Query: 181 DLNTQM*HTEMLFINIAFMIFLLGQLQVGIAKGYI*LI*KYMIDAAS 321
           DLN Q+  T  LFI +  + F+L        KG + LI  Y+I AAS
Sbjct: 360 DLNFQLFETATLFITVLVVAFMLQDGVANYLKGLM-LILCYLIVAAS 405


>03_05_0267 - 22538631-22539452
          Length = 273

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 126 WIIPSQIF*QISRLLCDIDTVITVIV 49
           W+IPS +   +  L+CD D VI+ ++
Sbjct: 224 WVIPSVVVALLRPLVCDADAVISAVL 249


>03_03_0255 +
           15894081-15894356,15894565-15894635,15894746-15894774,
           15894865-15895061,15895156-15895368,15895851-15895976,
           15896144-15896260,15896546-15896662,15896776-15896869,
           15897644-15897723
          Length = 439

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +1

Query: 181 DLNTQM*HTEMLFINIAFMIFLLGQLQVGIAKGYI*LI*KYMIDAAS 321
           DLN Q+  T  LFI +  + F+L +      KG + LI  Y+I AAS
Sbjct: 359 DLNFQLFETATLFITVLVVAFMLQEGTSNYFKGLM-LILCYLIVAAS 404


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,842,736
Number of Sequences: 37544
Number of extensions: 238066
Number of successful extensions: 498
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)