Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13b13
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c...    56   4e-09
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    29   0.50 
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    27   2.7  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   6.2  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    25   8.2  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    25   8.2  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    25   8.2  

>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 219

 Score = 56.0 bits (129), Expect = 4e-09
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
 Frame = -3

Query: 573 NGKSHWVFEARQSRVNRN--ESRLFWMGLTLCPLVWSTFFIFCLFGLKFKWMLLVLIALT 400
           +G+S W+FE+      RN  + + FW  L L P +W    I  +   +F W+ LV +A+ 
Sbjct: 113 DGESIWIFESADPSRPRNAVDQKTFWYALYLYPFIWIILGIVAIIRFEFLWLALVAVAIG 172

Query: 399 LTGANLYGYIKCKFGAK 349
           LT  N   Y +C   AK
Sbjct: 173 LTSVNTAAYSRCDKDAK 189


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 29.1 bits (62), Expect = 0.50
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 360 FGAKESLKSATTEFMKQQIFQNAPAFMFSQPTPPNAGNTGV 238
           F + +S KSA+  F +  I  N   FMF   T  ++ NT +
Sbjct: 334 FSSLQSAKSASVSFSRSYIDWNPEGFMFHSKTKKSSFNTSL 374


>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 307 DIPKRTCLYVLATHAAQRWQHWCRLNKI 224
           D+P+ TCL  +++H   R Q   RL +I
Sbjct: 625 DLPEATCLIQISSHYGSRRQEAQRLGRI 652


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +2

Query: 404 KAINTRSIHLNLSPKRQNIKKVDQTKGHSVRPIQN 508
           K  N  S+ LN +PK   I  +D       +P+ N
Sbjct: 264 KEFNNDSVVLNTTPKEMQISSLDAVDKLEDKPVSN 298


>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 355  SELTLYVTVEISAC*SQGDQY*EHPLELESEK 450
            SE+   V + IS   S GD+   H L+++SEK
Sbjct: 1268 SEIADAVVLNISKLYSSGDKVRAHVLDVDSEK 1299


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 495 LTLCPLVWSTFFIFCLFGLKFKWMLLVLIALTL 397
           L L  L+W+  + +CL  L F W++++    TL
Sbjct: 27  LILKVLLWTAPWYYCLTTLFFTWLIILYPRPTL 59


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +1

Query: 460 KESGPDQGAQRQAHPEQAALVPVDPALTGLEH 555
           K+  P        HP+Q  + P DPA+    H
Sbjct: 245 KDQKPKNHEAPHQHPQQKVVPPDDPAIVSHRH 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,216,076
Number of Sequences: 5004
Number of extensions: 43547
Number of successful extensions: 139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)