Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13b13
(587 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0432 + 3428920-3428934,3429007-3429111,3429341-3429397,342... 62 4e-10
01_03_0129 + 12831947-12832048,12832358-12832414,12832514-128327... 60 1e-09
01_06_0409 + 29142409-29142870 30 1.2
06_03_1036 + 27053480-27053729,27054616-27054704,27054881-270549... 29 2.1
01_03_0201 + 13758227-13758760,13758784-13759452 29 2.1
12_01_1095 + 11436012-11436053,11436322-11436595,11470730-114707... 29 2.7
01_06_0371 + 28819035-28819322,28820541-28820595,28821179-288213... 29 2.7
11_06_0008 - 19181933-19182009,19185148-19185691 29 3.6
04_04_1120 + 31037811-31038813,31038903-31038991,31039094-310391... 29 3.6
01_06_1072 + 34295227-34295316,34295410-34295583,34296268-342963... 29 3.6
10_01_0334 - 3680612-3681266,3682253-3682374 28 4.8
01_01_0522 - 3834551-3835451,3835992-3836572 28 6.3
12_01_0751 - 6759380-6759686,6759770-6759859,6759964-6760211,676... 27 8.4
11_08_0089 - 28288129-28288832,28290702-28290831,28291563-282918... 27 8.4
05_04_0307 + 20066169-20066410,20066803-20066858,20067490-200675... 27 8.4
05_04_0294 - 19901254-19902154,19904185-19905007,19906335-19906425 27 8.4
03_05_0441 + 24350026-24350081,24350186-24351011,24351088-243511... 27 8.4
01_07_0117 + 41171919-41172395 27 8.4
>05_01_0432 +
3428920-3428934,3429007-3429111,3429341-3429397,
3429499-3429702,3429790-3429849,3430797-3430923,
3431420-3431520
Length = 222
Score = 61.7 bits (143), Expect = 4e-10
Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Frame = -3
Query: 582 VDDNGKSHWVFEARQ----SRVNRNESRLFWMGLTLCPLVWSTFFIFCLFGLKFKWMLLV 415
+DD G S W FE +R+N+ +S LFW L L W IF L L+ ++L+V
Sbjct: 111 IDDEGNSVWKFECLDGEALARMNKKDSWLFWWTLYLTAAAWIILGIFSLIRLEADYLLVV 170
Query: 414 LIALTLTGANLYGYIKCKFGAKESLK 337
+ LTL+ AN+ G+ +C AK++++
Sbjct: 171 GVCLTLSLANIVGFTRCNKDAKKNIR 196
>01_03_0129 +
12831947-12832048,12832358-12832414,12832514-12832717,
12832799-12832858,12835026-12835152,12835801-12835889
Length = 212
Score = 60.1 bits (139), Expect = 1e-09
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Frame = -3
Query: 582 VDDNGKSHWVFEARQ----SRVNRNESRLFWMGLTLCPLVWSTFFIFCLFGLKFKWMLLV 415
+DD G S W FE +R+N+ +S LFW L L W IF L L ++L+V
Sbjct: 105 IDDEGNSVWKFECLDGESLARMNKKDSWLFWWTLYLTAAAWIVLGIFSLIRLHADYLLVV 164
Query: 414 LIALTLTGANLYGYIKCKFGAKESLKSAT 328
+ L+L+ AN+ G+ KC AK+++ T
Sbjct: 165 GVCLSLSIANIVGFTKCNKDAKKNVADWT 193
>01_06_0409 + 29142409-29142870
Length = 153
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +3
Query: 462 RKWTRPRGTASGPSRTGGSRSC*PGSDGPRTPSAT 566
R+W+RP A G R R C GS G R P+AT
Sbjct: 44 RRWSRPDLDAGGSGRR--RRQCGDGSGGGRGPAAT 76
>06_03_1036 +
27053480-27053729,27054616-27054704,27054881-27054950,
27055145-27055228,27055332-27055408,27055519-27055583,
27055723-27055765,27055889-27055952,27056126-27056254,
27056522-27056625,27056724-27056828
Length = 359
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = -3
Query: 438 KFKWMLLVLIALTLTGANLYGYIKCKFGAKESLKSATTEFMKQ 310
+F W + +L+A + G + GY+ K+ + + S M Q
Sbjct: 296 RFGWFITILVASCVAGVGIAGYVFYKYRLRSYMDSEIMAIMSQ 338
>01_03_0201 + 13758227-13758760,13758784-13759452
Length = 400
Score = 29.5 bits (63), Expect = 2.1
Identities = 25/78 (32%), Positives = 35/78 (44%)
Frame = -3
Query: 549 EARQSRVNRNESRLFWMGLTLCPLVWSTFFIFCLFGLKFKWMLLVLIALTLTGANLYGYI 370
+A ++ R+ SR +W+ T C W +F F LF L L L+A L + L G
Sbjct: 148 DAGGGKITRSSSRRWWLCPTGCYARWGSFMEFLLF-LGSTLGALALMAARL--SQLAGAA 204
Query: 369 KCKFGAKESLKSATTEFM 316
A E L+ AT M
Sbjct: 205 PGLAPASELLRRATLVVM 222
>12_01_1095 +
11436012-11436053,11436322-11436595,11470730-11470762,
11470770-11471494
Length = 357
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = -2
Query: 544 PSEPGQQEREPPVLDGPDAVPLGLVHFLYILPFRTQ 437
P EP QQ PP L +VPLG+V+ L + PFR++
Sbjct: 5 PPEPPQQ---PPQL----SVPLGIVNVLSLYPFRSE 33
>01_06_0371 + 28819035-28819322,28820541-28820595,28821179-28821354,
28821481-28821702,28821796-28822034,28822107-28822632,
28822726-28822999,28823098-28823737,28823833-28824061,
28824299-28824565,28824700-28824963,28825045-28825689
Length = 1274
Score = 29.1 bits (62), Expect = 2.7
Identities = 22/76 (28%), Positives = 29/76 (38%)
Frame = -3
Query: 585 YVDDNGKSHWVFEARQSRVNRNESRLFWMGLTLCPLVWSTFFIFCLFGLKFKWMLLVLIA 406
+ DD S AR S N RL L L V ST + + W L ++I
Sbjct: 799 WFDDPRNSSGALGARLSVDALNVRRLVGDNLALAVQVVSTLITGIVIAMIADWKLTLIIL 858
Query: 405 LTLTGANLYGYIKCKF 358
+ L GY + KF
Sbjct: 859 CVIPLVGLQGYAQVKF 874
>11_06_0008 - 19181933-19182009,19185148-19185691
Length = 206
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 472 PDQGAQRQAHPEQAALVPVDPALTGLEHPV 561
P+ G R +HP+ L+PV L GL PV
Sbjct: 113 PETGGHRVSHPQAPPLLPVLLELGGLRAPV 142
>04_04_1120 +
31037811-31038813,31038903-31038991,31039094-31039163,
31039270-31039353,31039452-31039528,31039631-31039712,
31039847-31039929,31040270-31040333,31040435-31040566,
31040674-31040777,31040901-31040996,31041144-31041251
Length = 663
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = -3
Query: 435 FKWMLLVLIALTLTGANLYGYIKCKFGAKESLKSATTEFMKQ 310
F W++ L+ L GA + GY+ K+ + + S M Q
Sbjct: 568 FGWLVTTLVLSCLAGAGVAGYVFYKYRLRRYMDSEVMAIMSQ 609
>01_06_1072 +
34295227-34295316,34295410-34295583,34296268-34296322,
34296410-34296679,34296881-34297092,34297276-34297396,
34297674-34297761,34297834-34297912,34298092-34298179,
34298312-34298352,34298477-34298529,34298623-34298779,
34298862-34299053
Length = 539
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 580 GRQRQVALGVRGPSEPGQQEREPPVLDG 497
G+QR + LG+ GP G PPVL+G
Sbjct: 245 GQQRMIDLGITGPE--GHALSRPPVLEG 270
>10_01_0334 - 3680612-3681266,3682253-3682374
Length = 258
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Frame = +3
Query: 462 RKWTRPRGTASGPS--RTGGSRSC*PGSDGPRTPSATCRC 575
R W PRG SG R GGSR G+ G +A C
Sbjct: 142 RSWRSPRGAGSGRGCYRRGGSREGRRGARGASAAAAVDGC 181
>01_01_0522 - 3834551-3835451,3835992-3836572
Length = 493
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 471 TRPRGTASGPSRTGGSRSC*PGSDGPRTPSATCRCRPH 584
T P S S G S S S G TP+++CR +PH
Sbjct: 18 TAPDSRRSWISDIGSSSSVSARSFGGDTPASSCRYKPH 55
>12_01_0751 -
6759380-6759686,6759770-6759859,6759964-6760211,
6760268-6760328,6760504-6760523,6760695-6760818,
6760941-6760987,6761744-6761866
Length = 339
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -2
Query: 550 RGPSEPGQQEREPPVLDGPD 491
RGPS+P QE P VLD P+
Sbjct: 265 RGPSKPKGQEDAPAVLDIPE 284
>11_08_0089 -
28288129-28288832,28290702-28290831,28291563-28291856,
28292000-28292098,28292199-28292285,28292524-28292805
Length = 531
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 260 GGVGCENIKAGAFWNICC 313
GGVGC GA N+CC
Sbjct: 429 GGVGCGTAACGADVNVCC 446
>05_04_0307 +
20066169-20066410,20066803-20066858,20067490-20067581,
20068400-20068502,20068623-20068760,20068898-20069148
Length = 293
Score = 27.5 bits (58), Expect = 8.4
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +1
Query: 424 HPLELESEKAEYKESGPDQGAQRQAHPE---QAALVPVD 531
HPL ESE E K G AQR+ E QA +PVD
Sbjct: 150 HPLYRESELIEDKSLGVRNAAQRKLFDELGIQAEELPVD 188
>05_04_0294 - 19901254-19902154,19904185-19905007,19906335-19906425
Length = 604
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 274 REHKGRCVLEYLLLHELCGR*LEALFGSELTLYVTVEI 387
R+ G + ++L +E+C R A FG+ L Y+T ++
Sbjct: 18 RKQGGFRTMPFILANEICDRFATAGFGANLITYLTQQL 55
>03_05_0441 +
24350026-24350081,24350186-24351011,24351088-24351189,
24351278-24351343,24351418-24351483,24351594-24351800,
24351925-24352086
Length = 494
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 586 LCGRQRQVALGVRGPSEPGQQEREPPVLDGPDAVPLG 476
+CG QV + R SEPG++ P + +A+P G
Sbjct: 203 ICG-SNQVQVQQRTASEPGRRGAPPSAVGSANAIPCG 238
>01_07_0117 + 41171919-41172395
Length = 158
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 466 SGPDQGAQRQAHPEQAALVPVDPALT 543
+GP G R A P AA++P PAL+
Sbjct: 45 TGPGHGGGRHAAPAPAAVLPPAPALS 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,220,546
Number of Sequences: 37544
Number of extensions: 278199
Number of successful extensions: 851
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -