Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13b13
         (587 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC008430-1|AAH08430.1|  205|Homo sapiens family with sequence si...   103   5e-22
AF223467-1|AAF64142.1|  205|Homo sapiens NPD008 protein protein.      103   5e-22
AF151906-1|AAD34143.1|  181|Homo sapiens CGI-148 protein protein.      94   3e-19
BC011952-1|AAH11952.1|  276|Homo sapiens family with sequence si...    61   3e-09
AB074181-1|BAE45741.1|  164|Homo sapiens putative protein produc...    59   1e-08
BC067364-1|AAH67364.1|  871|Homo sapiens PRP40 pre-mRNA processi...    30   7.0  
BC050398-1|AAH50398.1|  788|Homo sapiens PRPF40B protein protein.      30   7.0  
X53795-1|CAA37804.1|  267|Homo sapiens inducible membrane protei...    29   9.2  
U67274-1|AAC51205.1|  267|Homo sapiens metastasis suppressor pro...    29   9.2  
U20770-1|AAC50133.1|  267|Homo sapiens cell surface glycoprotein...    29   9.2  
S48196-1|AAB23825.1|  267|Homo sapiens C33 antigen protein.            29   9.2  
CR542255-1|CAG47051.1|  267|Homo sapiens KAI1 protein.                 29   9.2  
CR407650-1|CAG28578.1|  267|Homo sapiens KAI1 protein.                 29   9.2  
BT019762-1|AAV38567.1|  267|Homo sapiens kangai 1 (suppression o...    29   9.2  
BT019761-1|AAV38566.1|  267|Homo sapiens kangai 1 (suppression o...    29   9.2  
BC030643-1|AAH30643.1|  265|Homo sapiens Williams-Beuren syndrom...    29   9.2  
BC001821-1|AAH01821.1|  267|Homo sapiens CD82 molecule protein.        29   9.2  
BC000726-1|AAH00726.1|  267|Homo sapiens CD82 molecule protein.        29   9.2  
AY372054-1|AAQ74836.1|  168|Homo sapiens WBSCR28 isoform B protein.    29   9.2  
AY372053-1|AAQ74835.1|  265|Homo sapiens WBSCR28 isoform A protein.    29   9.2  

>BC008430-1|AAH08430.1|  205|Homo sapiens family with sequence
           similarity 18, member B protein.
          Length = 205

 Score =  103 bits (247), Expect = 5e-22
 Identities = 47/104 (45%), Positives = 69/104 (66%), Gaps = 7/104 (6%)
 Frame = -3

Query: 585 YVDDNGKSHWVFEARQSRVNRN------ESRLFWMGLTLCPLVWSTFFIFCLFGLKFKWM 424
           ++D++GKSHWVFE+R+     N      ESR+FW+GL  CP++W  F    LF  + KW+
Sbjct: 95  HIDEDGKSHWVFESRKESSQENKTVSEAESRIFWLGLIACPVLWVIFAFSALFSFRVKWL 154

Query: 423 LLVLIALTLTGANLYGYIKCKFGAKESLKS-ATTEFMKQQIFQN 295
            +V++ + L GANLYGYI+CK  +++ L S AT+ F KQ + QN
Sbjct: 155 AVVIMGVVLQGANLYGYIRCKVRSRKHLTSMATSYFGKQFLRQN 198


>AF223467-1|AAF64142.1|  205|Homo sapiens NPD008 protein protein.
          Length = 205

 Score =  103 bits (247), Expect = 5e-22
 Identities = 47/104 (45%), Positives = 69/104 (66%), Gaps = 7/104 (6%)
 Frame = -3

Query: 585 YVDDNGKSHWVFEARQSRVNRN------ESRLFWMGLTLCPLVWSTFFIFCLFGLKFKWM 424
           ++D++GKSHWVFE+R+     N      ESR+FW+GL  CP++W  F    LF  + KW+
Sbjct: 95  HIDEDGKSHWVFESRKESSQENKTVSEAESRIFWLGLIACPVLWVIFAFSALFSFRVKWL 154

Query: 423 LLVLIALTLTGANLYGYIKCKFGAKESLKS-ATTEFMKQQIFQN 295
            +V++ + L GANLYGYI+CK  +++ L S AT+ F KQ + QN
Sbjct: 155 AVVIMGVVLQGANLYGYIRCKVRSRKHLTSMATSYFGKQFLRQN 198


>AF151906-1|AAD34143.1|  181|Homo sapiens CGI-148 protein protein.
          Length = 181

 Score = 94.3 bits (224), Expect = 3e-19
 Identities = 39/85 (45%), Positives = 56/85 (65%), Gaps = 6/85 (7%)
 Frame = -3

Query: 585 YVDDNGKSHWVFEARQSRVNRN------ESRLFWMGLTLCPLVWSTFFIFCLFGLKFKWM 424
           ++D++GKSHWVFE+R+     N      ESR+FW+GL  CP++W  F    LF  + KW+
Sbjct: 95  HIDEDGKSHWVFESRKESSQENKTVSEAESRIFWLGLIACPVLWVIFAFSALFSFRVKWL 154

Query: 423 LLVLIALTLTGANLYGYIKCKFGAK 349
            +V++ + L GANLYGYI+CK   K
Sbjct: 155 AVVIMGVVLQGANLYGYIRCKVRKK 179


>BC011952-1|AAH11952.1|  276|Homo sapiens family with sequence
           similarity 18, member B2 protein.
          Length = 276

 Score = 60.9 bits (141), Expect = 3e-09
 Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 6/60 (10%)
 Frame = -3

Query: 585 YVDDNGKSHWVFEARQSRVNRN------ESRLFWMGLTLCPLVWSTFFIFCLFGLKFKWM 424
           ++D++GKSHWVFE+R+     N      ESR+FW+GL  C ++W  F    LF    KW+
Sbjct: 95  HIDEDGKSHWVFESRKESSQENKTVSEAESRIFWLGLIACSVLWVIFAFSALFSFTVKWL 154


>AB074181-1|BAE45741.1|  164|Homo sapiens putative protein product
           of Nbla10383 protein.
          Length = 164

 Score = 59.3 bits (137), Expect = 1e-08
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 6/60 (10%)
 Frame = -3

Query: 585 YVDDNGKSHWVFEARQSRVNRN------ESRLFWMGLTLCPLVWSTFFIFCLFGLKFKWM 424
           ++D++GK HWVFE+R+     N      ESR+FW+GL  C ++W  F    LF    KW+
Sbjct: 95  HIDEDGKGHWVFESRKESSQENKTVSEAESRIFWLGLIACSVLWVIFAFSALFSFTVKWL 154


>BC067364-1|AAH67364.1|  871|Homo sapiens PRP40 pre-mRNA processing
           factor 40 homolog B (S. cerevisiae) protein.
          Length = 871

 Score = 29.9 bits (64), Expect = 7.0
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -2

Query: 580 GRQRQVALGVRGPSEPGQQEREPPVLDGPDAVPLGLV 470
           G+Q+Q       P  P  Q   PPV  GP  VP GL+
Sbjct: 180 GKQQQQLPQTLQPQPPQPQPDPPPVPPGPTPVPTGLL 216


>BC050398-1|AAH50398.1|  788|Homo sapiens PRPF40B protein protein.
          Length = 788

 Score = 29.9 bits (64), Expect = 7.0
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -2

Query: 580 GRQRQVALGVRGPSEPGQQEREPPVLDGPDAVPLGLV 470
           G+Q+Q       P  P  Q   PPV  GP  VP GL+
Sbjct: 180 GKQQQQLPQTLQPQPPQPQPDPPPVPPGPTPVPTGLL 216


>X53795-1|CAA37804.1|  267|Homo sapiens inducible membrane protein
           protein.
          Length = 267

 Score = 29.5 bits (63), Expect = 9.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 453 CLFGLKFKWMLLVLIALTLTGANLY 379
           CL GL F ++LL+LIA    GA  Y
Sbjct: 83  CLLGLYFAFLLLILIAQVTAGALFY 107


>U67274-1|AAC51205.1|  267|Homo sapiens metastasis suppressor
           protein.
          Length = 267

 Score = 29.5 bits (63), Expect = 9.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 453 CLFGLKFKWMLLVLIALTLTGANLY 379
           CL GL F ++LL+LIA    GA  Y
Sbjct: 83  CLLGLYFAFLLLILIAQVTAGALFY 107


>U20770-1|AAC50133.1|  267|Homo sapiens cell surface glycoprotein
           protein.
          Length = 267

 Score = 29.5 bits (63), Expect = 9.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 453 CLFGLKFKWMLLVLIALTLTGANLY 379
           CL GL F ++LL+LIA    GA  Y
Sbjct: 83  CLLGLYFAFLLLILIAQVTAGALFY 107


>S48196-1|AAB23825.1|  267|Homo sapiens C33 antigen protein.
          Length = 267

 Score = 29.5 bits (63), Expect = 9.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 453 CLFGLKFKWMLLVLIALTLTGANLY 379
           CL GL F ++LL+LIA    GA  Y
Sbjct: 83  CLLGLYFAFLLLILIAQVTAGALFY 107


>CR542255-1|CAG47051.1|  267|Homo sapiens KAI1 protein.
          Length = 267

 Score = 29.5 bits (63), Expect = 9.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 453 CLFGLKFKWMLLVLIALTLTGANLY 379
           CL GL F ++LL+LIA    GA  Y
Sbjct: 83  CLLGLYFAFLLLILIAQVTAGALFY 107


>CR407650-1|CAG28578.1|  267|Homo sapiens KAI1 protein.
          Length = 267

 Score = 29.5 bits (63), Expect = 9.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 453 CLFGLKFKWMLLVLIALTLTGANLY 379
           CL GL F ++LL+LIA    GA  Y
Sbjct: 83  CLLGLYFAFLLLILIAQVTAGALFY 107


>BT019762-1|AAV38567.1|  267|Homo sapiens kangai 1 (suppression of
           tumorigenicity 6, prostate; CD82 antigen (R2 leukocyte
           protein.
          Length = 267

 Score = 29.5 bits (63), Expect = 9.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 453 CLFGLKFKWMLLVLIALTLTGANLY 379
           CL GL F ++LL+LIA    GA  Y
Sbjct: 83  CLLGLYFAFLLLILIAQVTAGALFY 107


>BT019761-1|AAV38566.1|  267|Homo sapiens kangai 1 (suppression of
           tumorigenicity 6, prostate; CD82 antigen (R2 leukocyte
           protein.
          Length = 267

 Score = 29.5 bits (63), Expect = 9.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 453 CLFGLKFKWMLLVLIALTLTGANLY 379
           CL GL F ++LL+LIA    GA  Y
Sbjct: 83  CLLGLYFAFLLLILIAQVTAGALFY 107


>BC030643-1|AAH30643.1|  265|Homo sapiens Williams-Beuren syndrome
           chromosome region 28 protein.
          Length = 265

 Score = 29.5 bits (63), Expect = 9.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 504 WMGLTLCPLVWSTFFIFCLFGLKFKWMLLVLI 409
           W  L L   +W+  F+ CL GL    +LLV++
Sbjct: 117 WEQLGLSVAIWTDLFLSCLHGLMLVALLLVVV 148


>BC001821-1|AAH01821.1|  267|Homo sapiens CD82 molecule protein.
          Length = 267

 Score = 29.5 bits (63), Expect = 9.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 453 CLFGLKFKWMLLVLIALTLTGANLY 379
           CL GL F ++LL+LIA    GA  Y
Sbjct: 83  CLLGLYFAFLLLILIAQVTAGALFY 107


>BC000726-1|AAH00726.1|  267|Homo sapiens CD82 molecule protein.
          Length = 267

 Score = 29.5 bits (63), Expect = 9.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 453 CLFGLKFKWMLLVLIALTLTGANLY 379
           CL GL F ++LL+LIA    GA  Y
Sbjct: 83  CLLGLYFAFLLLILIAQVTAGALFY 107


>AY372054-1|AAQ74836.1|  168|Homo sapiens WBSCR28 isoform B protein.
          Length = 168

 Score = 29.5 bits (63), Expect = 9.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 504 WMGLTLCPLVWSTFFIFCLFGLKFKWMLLVLI 409
           W  L L   +W+  F+ CL GL    +LLV++
Sbjct: 20  WEQLGLSVAIWTDLFLSCLHGLMLVALLLVVV 51


>AY372053-1|AAQ74835.1|  265|Homo sapiens WBSCR28 isoform A protein.
          Length = 265

 Score = 29.5 bits (63), Expect = 9.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 504 WMGLTLCPLVWSTFFIFCLFGLKFKWMLLVLI 409
           W  L L   +W+  F+ CL GL    +LLV++
Sbjct: 117 WEQLGLSVAIWTDLFLSCLHGLMLVALLLVVV 148


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,331,693
Number of Sequences: 237096
Number of extensions: 1568886
Number of successful extensions: 4662
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 4430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4657
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6155099854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)