Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13b13
(587 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014296-1551|AAN11977.1| 215|Drosophila melanogaster CG5021-PB... 163 2e-40
AE014296-1550|AAF50344.2| 218|Drosophila melanogaster CG5021-PA... 163 2e-40
AY071297-1|AAL48919.1| 223|Drosophila melanogaster RE32705p pro... 157 8e-39
BT023168-1|AAY55584.1| 351|Drosophila melanogaster IP03352p pro... 30 2.7
BT023157-1|AAY55573.1| 351|Drosophila melanogaster IP03452p pro... 30 2.7
BT010302-1|AAQ23620.1| 891|Drosophila melanogaster LD02432p pro... 30 2.7
BT001412-1|AAN71167.1| 867|Drosophila melanogaster GH11271p pro... 30 2.7
AE013599-2863|AAF57575.1| 891|Drosophila melanogaster CG11961-P... 30 2.7
AE013599-2862|AAF57574.2| 867|Drosophila melanogaster CG11961-P... 30 2.7
BT001868-1|AAN71638.1| 538|Drosophila melanogaster SD03344p pro... 29 4.7
AY061209-1|AAL28757.1| 538|Drosophila melanogaster LD15705p pro... 29 4.7
AE014297-3719|AAZ52545.1| 538|Drosophila melanogaster CG33095-P... 29 4.7
AE014297-3718|AAF56400.2| 538|Drosophila melanogaster CG33095-P... 29 4.7
>AE014296-1551|AAN11977.1| 215|Drosophila melanogaster CG5021-PB,
isoform B protein.
Length = 215
Score = 163 bits (396), Expect = 2e-40
Identities = 71/120 (59%), Positives = 88/120 (73%), Gaps = 3/120 (2%)
Frame = -3
Query: 585 YVDDNGKSHWVFEARQSRVNRNESRLFWMGLTLCPLVWSTFFIFCLFGLKFKWMLLVLIA 406
YVDD+G SHWVFE++ SRVN+NE R+FW+GL LCP+ W FF+F LFGLKFKW+LLV+IA
Sbjct: 96 YVDDDGVSHWVFESKNSRVNKNEQRIFWLGLILCPVFWGLFFLFALFGLKFKWLLLVMIA 155
Query: 405 LTLTGANLYGYIKCKFGAKESLKSATTEFMKQQIFQNAPAFM---FSQPTPPNAGNTGVV 235
+ L ANLYGY+KC +GA + L SA T+F+K Q F+NA M P P N TGVV
Sbjct: 156 IALNAANLYGYVKCNYGANKDLNSAATDFVKTQFFKNAVDIMTRPSGAPPPTNVRPTGVV 215
>AE014296-1550|AAF50344.2| 218|Drosophila melanogaster CG5021-PA,
isoform A protein.
Length = 218
Score = 163 bits (396), Expect = 2e-40
Identities = 71/120 (59%), Positives = 88/120 (73%), Gaps = 3/120 (2%)
Frame = -3
Query: 585 YVDDNGKSHWVFEARQSRVNRNESRLFWMGLTLCPLVWSTFFIFCLFGLKFKWMLLVLIA 406
YVDD+G SHWVFE++ SRVN+NE R+FW+GL LCP+ W FF+F LFGLKFKW+LLV+IA
Sbjct: 99 YVDDDGVSHWVFESKNSRVNKNEQRIFWLGLILCPVFWGLFFLFALFGLKFKWLLLVMIA 158
Query: 405 LTLTGANLYGYIKCKFGAKESLKSATTEFMKQQIFQNAPAFM---FSQPTPPNAGNTGVV 235
+ L ANLYGY+KC +GA + L SA T+F+K Q F+NA M P P N TGVV
Sbjct: 159 IALNAANLYGYVKCNYGANKDLNSAATDFVKTQFFKNAVDIMTRPSGAPPPTNVRPTGVV 218
>AY071297-1|AAL48919.1| 223|Drosophila melanogaster RE32705p
protein.
Length = 223
Score = 157 bits (382), Expect = 8e-39
Identities = 72/125 (57%), Positives = 89/125 (71%), Gaps = 8/125 (6%)
Frame = -3
Query: 585 YVDDNGKSHWVFEAR-----QSRVNRNESRLFWMGLTLCPLVWSTFFIFCLFGLKFKWML 421
YVDD+G SHWVFE++ QSRVN+NE R+FW+GL LCP+ W FF+F LFGLKFKW+L
Sbjct: 99 YVDDDGVSHWVFESKNSESYQSRVNKNEQRIFWLGLILCPVFWGLFFLFALFGLKFKWLL 158
Query: 420 LVLIALTLTGANLYGYIKCKFGAKESLKSATTEFMKQQIFQNAPAFM---FSQPTPPNAG 250
LV+IA+ L ANLYGY+KC +GA + L SA T+F+K Q F+NA M P P N
Sbjct: 159 LVMIAIALNAANLYGYVKCNYGANKDLNSAATDFVKTQFFKNAVDIMTRPSGAPPPTNVR 218
Query: 249 NTGVV 235
TGVV
Sbjct: 219 PTGVV 223
>BT023168-1|AAY55584.1| 351|Drosophila melanogaster IP03352p
protein.
Length = 351
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 383 RLAPVRVKAINTRSIHLNLSPKRQNIKKVDQTK 481
RLAP A++T +IH L P +Q K+ Q+K
Sbjct: 307 RLAPKLTSAVSTTNIHCYLLPSKQQKKERKQSK 339
>BT023157-1|AAY55573.1| 351|Drosophila melanogaster IP03452p
protein.
Length = 351
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 383 RLAPVRVKAINTRSIHLNLSPKRQNIKKVDQTK 481
RLAP A++T +IH L P +Q K+ Q+K
Sbjct: 307 RLAPKLTSAVSTTNIHCYLLPSKQQKKERKQSK 339
>BT010302-1|AAQ23620.1| 891|Drosophila melanogaster LD02432p
protein.
Length = 891
Score = 29.9 bits (64), Expect = 2.7
Identities = 23/68 (33%), Positives = 30/68 (44%)
Frame = +1
Query: 343 ALFGSELTLYVTVEISAC*SQGDQY*EHPLELESEKAEYKESGPDQGAQRQAHPEQAALV 522
A FG L LYVT+ I AC PL ++ E E+ PDQ +A LV
Sbjct: 58 AFFGFWLLLYVTISIPAC-----HRLPRPLTIQDE-----ETHPDQFIAERAEKNLRELV 107
Query: 523 PVDPALTG 546
+ P + G
Sbjct: 108 SLGPRVVG 115
>BT001412-1|AAN71167.1| 867|Drosophila melanogaster GH11271p
protein.
Length = 867
Score = 29.9 bits (64), Expect = 2.7
Identities = 23/68 (33%), Positives = 30/68 (44%)
Frame = +1
Query: 343 ALFGSELTLYVTVEISAC*SQGDQY*EHPLELESEKAEYKESGPDQGAQRQAHPEQAALV 522
A FG L LYVT+ I AC PL ++ E E+ PDQ +A LV
Sbjct: 34 AFFGFWLLLYVTISIPAC-----HRLPRPLTIQDE-----ETHPDQFIAERAEKNLRELV 83
Query: 523 PVDPALTG 546
+ P + G
Sbjct: 84 SLGPRVVG 91
>AE013599-2863|AAF57575.1| 891|Drosophila melanogaster CG11961-PA,
isoform A protein.
Length = 891
Score = 29.9 bits (64), Expect = 2.7
Identities = 23/68 (33%), Positives = 30/68 (44%)
Frame = +1
Query: 343 ALFGSELTLYVTVEISAC*SQGDQY*EHPLELESEKAEYKESGPDQGAQRQAHPEQAALV 522
A FG L LYVT+ I AC PL ++ E E+ PDQ +A LV
Sbjct: 58 AFFGFWLLLYVTISIPAC-----HRLPRPLTIQDE-----ETHPDQFIAERAEKNLRELV 107
Query: 523 PVDPALTG 546
+ P + G
Sbjct: 108 SLGPRVVG 115
>AE013599-2862|AAF57574.2| 867|Drosophila melanogaster CG11961-PB,
isoform B protein.
Length = 867
Score = 29.9 bits (64), Expect = 2.7
Identities = 23/68 (33%), Positives = 30/68 (44%)
Frame = +1
Query: 343 ALFGSELTLYVTVEISAC*SQGDQY*EHPLELESEKAEYKESGPDQGAQRQAHPEQAALV 522
A FG L LYVT+ I AC PL ++ E E+ PDQ +A LV
Sbjct: 34 AFFGFWLLLYVTISIPAC-----HRLPRPLTIQDE-----ETHPDQFIAERAEKNLRELV 83
Query: 523 PVDPALTG 546
+ P + G
Sbjct: 84 SLGPRVVG 91
>BT001868-1|AAN71638.1| 538|Drosophila melanogaster SD03344p
protein.
Length = 538
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -3
Query: 354 AKESLKSATTEFMKQQIFQNAPAFMFSQPTPPNAGNT 244
AK LK + TE Q+F N P +F+ P P NT
Sbjct: 316 AKPQLKHSKTELDDDQVFLNEPGLLFA-PFSPQYRNT 351
>AY061209-1|AAL28757.1| 538|Drosophila melanogaster LD15705p
protein.
Length = 538
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -3
Query: 354 AKESLKSATTEFMKQQIFQNAPAFMFSQPTPPNAGNT 244
AK LK + TE Q+F N P +F+ P P NT
Sbjct: 316 AKPQLKHSKTELDDDQVFLNEPGLLFA-PFSPQYRNT 351
>AE014297-3719|AAZ52545.1| 538|Drosophila melanogaster CG33095-PB,
isoform B protein.
Length = 538
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -3
Query: 354 AKESLKSATTEFMKQQIFQNAPAFMFSQPTPPNAGNT 244
AK LK + TE Q+F N P +F+ P P NT
Sbjct: 316 AKPQLKHSKTELDDDQVFLNEPGLLFA-PFSPQYRNT 351
>AE014297-3718|AAF56400.2| 538|Drosophila melanogaster CG33095-PA,
isoform A protein.
Length = 538
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -3
Query: 354 AKESLKSATTEFMKQQIFQNAPAFMFSQPTPPNAGNT 244
AK LK + TE Q+F N P +F+ P P NT
Sbjct: 316 AKPQLKHSKTELDDDQVFLNEPGLLFA-PFSPQYRNT 351
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,997,255
Number of Sequences: 53049
Number of extensions: 478184
Number of successful extensions: 1403
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1402
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2358819486
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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