Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13b13
         (587 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58755-12|ABJ99069.1|  205|Caenorhabditis elegans Hypothetical p...    75   5e-14
U58755-11|AAB00701.1|  247|Caenorhabditis elegans Hypothetical p...    75   5e-14
AL032648-8|CAI46618.1|  365|Caenorhabditis elegans Hypothetical ...    28   5.7  
U41263-8|AAC24430.1|  455|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>U58755-12|ABJ99069.1|  205|Caenorhabditis elegans Hypothetical
           protein C34D4.4b protein.
          Length = 205

 Score = 74.5 bits (175), Expect = 5e-14
 Identities = 30/86 (34%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
 Frame = -3

Query: 585 YVDDNGKSHWVFEARQ--SRVNRNESRLFWMGLTLCPLVWSTFFIFCLFGLKFKWMLLVL 412
           +VD +G +HW FE+ +  +R    + R+FW+GL + P  W  F +     LKF+WM++ L
Sbjct: 92  FVDADGNNHWKFESAKDMTRFATIDRRVFWLGLVVGPAAWIFFVVTAFLTLKFEWMIVAL 151

Query: 411 IALTLTGANLYGYIKCKFGAKESLKS 334
           +   +  ANL+GY++C++   E + S
Sbjct: 152 LGALMNMANLWGYLRCRWNNTEQMTS 177


>U58755-11|AAB00701.1|  247|Caenorhabditis elegans Hypothetical
           protein C34D4.4a protein.
          Length = 247

 Score = 74.5 bits (175), Expect = 5e-14
 Identities = 30/86 (34%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
 Frame = -3

Query: 585 YVDDNGKSHWVFEARQ--SRVNRNESRLFWMGLTLCPLVWSTFFIFCLFGLKFKWMLLVL 412
           +VD +G +HW FE+ +  +R    + R+FW+GL + P  W  F +     LKF+WM++ L
Sbjct: 134 FVDADGNNHWKFESAKDMTRFATIDRRVFWLGLVVGPAAWIFFVVTAFLTLKFEWMIVAL 193

Query: 411 IALTLTGANLYGYIKCKFGAKESLKS 334
           +   +  ANL+GY++C++   E + S
Sbjct: 194 LGALMNMANLWGYLRCRWNNTEQMTS 219


>AL032648-8|CAI46618.1|  365|Caenorhabditis elegans Hypothetical
           protein Y54G9A.10 protein.
          Length = 365

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -3

Query: 510 LFWMGLTLCPLVWSTFFIFCLFGLKFKWMLLVLIALTLTGANLYGYIKCKF 358
           +F +G +   + + T+ I     LKF W+LL +  L L    L+  IKC +
Sbjct: 2   IFIVGSSRQRICYPTYIIQNFELLKFPWLLLEISELFLFIITLFYSIKCSY 52


>U41263-8|AAC24430.1|  455|Caenorhabditis elegans Hypothetical
           protein T19D12.10 protein.
          Length = 455

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 465 FFIFCLFGLKFKWMLLVLIALTLTGANLYGYIKC 364
           FF+  L   KF   +    A+ L G N+ G +KC
Sbjct: 334 FFVMALTRSKFIAQIAYTGAIVLAGVNMIGVVKC 367


>Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical protein
            ZC84.1 protein.
          Length = 1556

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 263  GVGCENIKAGAFWNICCFMNSVVAD 337
            G  C++  A AF   CC  NSV  D
Sbjct: 928  GFTCQSYLANAFQGFCCTANSVCPD 952


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,339,014
Number of Sequences: 27780
Number of extensions: 249866
Number of successful extensions: 857
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)