Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13b13
         (587 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   1.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   1.7  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          23   2.9  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   3.9  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   5.1  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   5.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   6.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   6.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.0  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = -1

Query: 554 CSRPVRAGSTGTRAACSGWA*RCAP 480
           C+  +  G  G   AC GW  +  P
Sbjct: 596 CAEEIGRGQYGIVFACDGWGGKAGP 620


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = -1

Query: 554 CSRPVRAGSTGTRAACSGWA*RCAP 480
           C+  +  G  G   AC GW  +  P
Sbjct: 634 CAEEIGRGQYGIVFACDGWGGKAGP 658


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 462 RKWTRPRGTASGPSRTG 512
           R W+RPR +A   S+ G
Sbjct: 45  RSWSRPRESAQTTSKAG 61


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = -3

Query: 570 GKSHWVFEARQSRVNRNESRLFWMGLTLCPLVWSTF 463
           G +HW    R+S   RN  R+    +    + W+ F
Sbjct: 266 GTNHWDSGRRKSAAQRNVIRMLVAVVVAFFICWAPF 301


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 462 RKWTRPRGTASGPSRTG 512
           R W+RPR  A   S+ G
Sbjct: 166 RSWSRPREPAQTTSKAG 182


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 523 EREPPVLDGPDAVPL 479
           + +  VLDGPD+ PL
Sbjct: 149 DHQGSVLDGPDSPPL 163


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 276 SQPTPPNAGNTGVV*TRL 223
           +QPTPP+A   G   T L
Sbjct: 296 TQPTPPSATLVGTTITHL 313


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 12/38 (31%), Positives = 14/38 (36%)
 Frame = -2

Query: 307 DIPKRTCLYVLATHAAQRWQHWCRLNKINEDAYLGMIF 194
           DIP    L V  +H    W     L      A  GM+F
Sbjct: 246 DIPNELVLEVPLSHPTYDWFEKLELKWFAVPAVSGMVF 283


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 532  GQQEREPPVLDGPDAVP 482
            G++ +EPP L+G    P
Sbjct: 991  GKRRKEPPWLEGVHVTP 1007


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,410
Number of Sequences: 438
Number of extensions: 3247
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)