Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13b11
         (703 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC022323-1|AAH22323.1|  291|Homo sapiens popeye domain containin...    30   9.2  
AL359709-1|CAI17218.1|  291|Homo sapiens popeye domain containin...    30   9.2  
AL356775-1|CAI13615.1|  291|Homo sapiens popeye domain containin...    30   9.2  
AF204171-1|AAG23404.1|  291|Homo sapiens popeye protein 3 protein.     30   9.2  

>BC022323-1|AAH22323.1|  291|Homo sapiens popeye domain containing 3
           protein.
          Length = 291

 Score = 29.9 bits (64), Expect = 9.2
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +1

Query: 76  LFACNFI*YVQCFMQFIADFFTIKTLKF 159
           +F+ NF+ +V CFMQF+   + ++++ F
Sbjct: 77  IFSWNFVLFVICFMQFVHIAYQVRSITF 104


>AL359709-1|CAI17218.1|  291|Homo sapiens popeye domain containing 3
           protein.
          Length = 291

 Score = 29.9 bits (64), Expect = 9.2
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +1

Query: 76  LFACNFI*YVQCFMQFIADFFTIKTLKF 159
           +F+ NF+ +V CFMQF+   + ++++ F
Sbjct: 77  IFSWNFVLFVICFMQFVHIAYQVRSITF 104


>AL356775-1|CAI13615.1|  291|Homo sapiens popeye domain containing 3
           protein.
          Length = 291

 Score = 29.9 bits (64), Expect = 9.2
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +1

Query: 76  LFACNFI*YVQCFMQFIADFFTIKTLKF 159
           +F+ NF+ +V CFMQF+   + ++++ F
Sbjct: 77  IFSWNFVLFVICFMQFVHIAYQVRSITF 104


>AF204171-1|AAG23404.1|  291|Homo sapiens popeye protein 3 protein.
          Length = 291

 Score = 29.9 bits (64), Expect = 9.2
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +1

Query: 76  LFACNFI*YVQCFMQFIADFFTIKTLKF 159
           +F+ NF+ +V CFMQF+   + ++++ F
Sbjct: 77  IFSWNFVLFVICFMQFVHIAYQVRSITF 104


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,523,205
Number of Sequences: 237096
Number of extensions: 1558957
Number of successful extensions: 1804
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1804
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8119219030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)