Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13b11
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82260-1|CAB05140.1|  332|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U53335-7|AAA96172.2|  150|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z48716-4|CAA88600.1|  105|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z82260-1|CAB05140.1|  332|Caenorhabditis elegans Hypothetical
           protein C32H11.2 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 483 VMVCSSIMNTYLFYYLHCW*SLLFIYKC*PYS*DNTEKTA-PVKGAFHGR 629
           ++  S  M  Y+   LH   S L I KC  Y   +TE+T  P+ G F+ R
Sbjct: 105 IIFLSMCMLYYITQVLHYLISFLAIRKCFVYFFPSTERTIFPILGRFYKR 154


>U53335-7|AAA96172.2|  150|Caenorhabditis elegans Hypothetical
           protein C55C3.2 protein.
          Length = 150

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 36  IEINFFPIAIVFKVICMQFYLICSMLYAIHCR 131
           + I+ F  AI+F V C+ F ++  ++Y   C+
Sbjct: 70  VSISVFRPAIIFLVTCLDFLVLLGLVYKKTCK 101


>Z48716-4|CAA88600.1|  105|Caenorhabditis elegans Hypothetical
           protein F59B10.6 protein.
          Length = 105

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/50 (24%), Positives = 28/50 (56%)
 Frame = +3

Query: 9   VNKYITKTFIEINFFPIAIVFKVICMQFYLICSMLYAIHCRFFHNKNIKI 158
           VN    K  I++ F  ++ +F ++   FY+I SM++ ++C + +   + +
Sbjct: 10  VNMESYKPAIDLLFDEVSQIFWIVLF-FYVIVSMIWIMYCCYINKMELSL 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,918,686
Number of Sequences: 27780
Number of extensions: 276504
Number of successful extensions: 525
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)