Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13b11
         (703 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   2.1  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   2.1  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   2.8  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   2.8  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.7  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   6.5  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   6.5  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   6.5  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   8.6  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 83  ANNFENYCYWKKINFNES 30
           + NF    +W  INFNE+
Sbjct: 538 STNFGREDFWNSINFNEN 555


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 83  ANNFENYCYWKKINFNES 30
           + NF    +W  INFNE+
Sbjct: 538 STNFGREDFWNSINFNEN 555


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 143 IVKKSAMNCIKH*TY*IKLHANNFENYCYWKKINFN 36
           I+   + N I +  Y    + NN+ N  Y KK+ +N
Sbjct: 80  IISSLSNNTIHNNNYKYNYNNNNYNNNNYNKKLYYN 115


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 143 IVKKSAMNCIKH*TY*IKLHANNFENYCYWKKINFN 36
           I+   + N I +  Y    + NN+ N  Y KK+ +N
Sbjct: 80  IISSLSNNTIHNNNYKYNYNNNNYNNNNYNKKLYYN 115


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 639 SMSSDHEKRLLRALFSLY 586
           S+   HEKRLL  L S Y
Sbjct: 49  SLCGRHEKRLLNELLSSY 66


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 639 SMSSDHEKRLLRALFSLY 586
           S+   HEKRLL  L S Y
Sbjct: 49  SLCGRHEKRLLNELLSSY 66


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +3

Query: 84  MQFYLICSMLYAIHCRFF 137
           + FY+ C ++  I+CR +
Sbjct: 199 ISFYVPCIVMLGIYCRLY 216


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 488 HYLTATVSEKSFGKMVGVLQKQFCLMLP 405
           +YL+ TV+   +  M    ++ F LMLP
Sbjct: 337 YYLSTTVNPLLYNIMSNKFREAFKLMLP 364


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -2

Query: 147 FYCEKICNELHKALNILN 94
           + CE++CN L +    +N
Sbjct: 245 YNCERLCNRLGRVKRFIN 262


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 89  LHANNFENYCYWKKINFNESFSN 21
           +H NN   Y Y  K N+N +  N
Sbjct: 90  IHNNNNYKYNYNNKYNYNNNNYN 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,901
Number of Sequences: 438
Number of extensions: 3488
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)