Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13b07
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0157 + 10897769-10898066,10898308-10899461 34 0.085
03_05_0708 - 27028243-27028336,27028853-27029238 30 1.8
05_01_0213 - 1606383-1606816,1607695-1608355 29 2.4
09_06_0267 + 21938300-21938371,21938963-21939235,21940665-219412... 28 5.6
09_02_0234 - 6116931-6117052,6117549-6118369,6118573-6118601,611... 28 5.6
04_04_0819 - 28312667-28313219,28315157-28316430 28 7.4
04_04_0528 + 25986862-25987938,25988025-25988965,25989071-25989140 28 7.4
09_01_0174 + 2504058-2504253,2504929-2505076,2505265-2505456,250... 27 9.8
03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434 27 9.8
>11_03_0157 + 10897769-10898066,10898308-10899461
Length = 483
Score = 34.3 bits (75), Expect = 0.085
Identities = 19/82 (23%), Positives = 38/82 (46%)
Frame = -2
Query: 433 LFIVGLACAVPKLELFMELVGAVCLSVLGLLLPSVIEIIWRWGRDIGPTHWIVWKNLVIC 254
L I+ LA +VP + + L G++ + ++ P + RWGR P V N +
Sbjct: 399 LLILALALSVPYFQYVLSLTGSLVSVAISIIFPCAFYLKIRWGRVSRPA---VALNAAMI 455
Query: 253 LFAIIAMVSGVTFAIKSMLENL 188
++ V G + S+++++
Sbjct: 456 AAGVVLAVVGTASSATSLVQSI 477
>03_05_0708 - 27028243-27028336,27028853-27029238
Length = 159
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -2
Query: 526 VPVDIAWRRIQDRIPAKTHRWAMSGLRLFGTLFIVGLACA 407
+P +AW R++ R+ A + +S + G L + GLAC+
Sbjct: 22 LPPPLAWERMRARMAASSLSSPLSTITRGGPLLLAGLACS 61
>05_01_0213 - 1606383-1606816,1607695-1608355
Length = 364
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +3
Query: 294 PMSLPHLQIISMTDGKSSPKTERQTAPTNSMKSSNFGTAQAKPTINRV 437
P+S+ H Q S + SS T T T+S S G + PT +
Sbjct: 176 PVSVLHAQHSSSSSSSSSTTTTTTTTTTSSCSSEEVGPSSPSPTSEEI 223
>09_06_0267 +
21938300-21938371,21938963-21939235,21940665-21941202,
21941288-21941490,21941603-21941827
Length = 436
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -2
Query: 586 QTAKLLV-ACVMLLSFALIFYVPVDIAWRRIQDRIPA 479
QTA +L+ VML+S + Y P++ + R++ D I A
Sbjct: 400 QTAAILIFITVMLVSGVAVSYFPLETSGRKLSDHIAA 436
>09_02_0234 -
6116931-6117052,6117549-6118369,6118573-6118601,
6118711-6119020,6119469-6119476,6120104-6120232,
6120341-6120445
Length = 507
Score = 28.3 bits (60), Expect = 5.6
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +1
Query: 214 QKSPLRPLRLSRTGILQGSSIRSNELDQCP 303
Q++P PL++ ++ GSS++ + +D P
Sbjct: 251 QRTPFSPLKIDNVEVIAGSSLQEDNIDYNP 280
>04_04_0819 - 28312667-28313219,28315157-28316430
Length = 608
Score = 27.9 bits (59), Expect = 7.4
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Frame = -2
Query: 583 TAKLLVACVMLLSFALIFYVPVDI--AWRRIQDRIPAKTHRWAMSGLRLFGTLFIVGL-A 413
T L V + L L F +PV + + + + K + W + L + +VGL A
Sbjct: 296 TGWLSVTVQLGLCINLFFTMPVMMNPVYEVAERLLCRKRYAWWLRWL----LVMVVGLMA 351
Query: 412 CAVPKLELFMELVGAVCLSVLGLLLPSVIEI 320
VP F+ LVG+ +LG +LP+ +
Sbjct: 352 MLVPNFADFLSLVGSSVCVLLGFVLPAAFHL 382
>04_04_0528 + 25986862-25987938,25988025-25988965,25989071-25989140
Length = 695
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 330 TDGK-SSPKTERQTAPTNSMKSSNFGTAQAKPTINRVPN 443
+DG+ +SP + + AP N+ + S+ G Q PT N P+
Sbjct: 551 SDGRPASPNWDAEKAP-NTSEGSDSGVTQGSPTKNTTPS 588
>09_01_0174 +
2504058-2504253,2504929-2505076,2505265-2505456,
2505878-2506006,2506368-2506537,2506946-2507076,
2507391-2507468
Length = 347
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -2
Query: 376 VGAVCLSVLGLLLPSVIEIIWRWGRDIGPTH 284
V AVCL+V G+ PS + + W RD+ P H
Sbjct: 91 VRAVCLAVSGVNHPSDQQRMLDWIRDLFPGH 121
>03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434
Length = 418
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Frame = -2
Query: 568 VACVMLLSFALIFYVPVDIAWRRIQDRIPAKTHRWAMSGLRLFGT-LFIVG----LACAV 404
V V+ ++ AL F V + ++ R+ WA + + + +VG +AC V
Sbjct: 294 VKIVLCVALALTFPVMMHPIHEIVEARLFPSAGGWARKRAAVQASRVAVVGAVTAVACFV 353
Query: 403 PKLELFMELVGAVCLSVLGLLLPSVIEI 320
P F VG+ ++L +LP++ +
Sbjct: 354 PAFGEFAAFVGSTVCALLSFVLPALFHL 381
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,248,596
Number of Sequences: 37544
Number of extensions: 312373
Number of successful extensions: 816
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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