Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13b07
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021481-5|CAA16336.2| 455|Caenorhabditis elegans Hypothetical ... 65 4e-11
Z11505-1|CAA77582.1| 460|Caenorhabditis elegans Hypothetical pr... 46 2e-05
AL031630-22|CAA20995.2| 454|Caenorhabditis elegans Hypothetical... 38 0.008
AL034393-17|CAA22315.1| 503|Caenorhabditis elegans Hypothetical... 35 0.044
AL023828-24|CAD56604.1| 196|Caenorhabditis elegans Hypothetical... 32 0.41
Z97191-2|CAB10025.1| 481|Caenorhabditis elegans Hypothetical pr... 31 0.54
U00055-6|AAA50724.1| 494|Caenorhabditis elegans Hypothetical pr... 31 0.94
Z30423-12|CAA83006.2| 486|Caenorhabditis elegans Hypothetical p... 30 1.2
AF031935-1|AAB87066.1| 486|Caenorhabditis elegans UNC-47 protein. 30 1.2
Z81076-2|CAB03051.3| 333|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z50858-6|CAD44135.1| 949|Caenorhabditis elegans Hypothetical pr... 28 6.6
U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type chlor... 28 6.6
U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type chlor... 28 6.6
AL021567-6|CAD44122.1| 949|Caenorhabditis elegans Hypothetical ... 28 6.6
AL021567-2|CAD44121.1| 947|Caenorhabditis elegans Hypothetical ... 28 6.6
AL021567-1|CAA16508.2| 898|Caenorhabditis elegans Hypothetical ... 28 6.6
AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type chlo... 28 6.6
AF173173-1|AAF13166.1| 978|Caenorhabditis elegans CLC chloride ... 28 6.6
AF125971-6|AAP86613.1| 176|Caenorhabditis elegans Hypothetical ... 28 6.6
AF125971-5|AAD14765.1| 484|Caenorhabditis elegans Hypothetical ... 28 6.6
>AL021481-5|CAA16336.2| 455|Caenorhabditis elegans Hypothetical
protein Y43F4B.7 protein.
Length = 455
Score = 65.3 bits (152), Expect = 4e-11
Identities = 42/128 (32%), Positives = 68/128 (53%), Gaps = 2/128 (1%)
Frame = -2
Query: 586 QTAKLL-VACVMLLSFALIFYVPVDIAWRRIQDRIPAKTHRWAMSGLRLFGTLFIVGLAC 410
QT KL+ VAC+M+ S+ L FYVP++ + I +IP + R G + +A
Sbjct: 323 QTIKLMFVACIMI-SYPLQFYVPMERIEKWITRKIPVDKQTLYIYIARYSGVILTCAIAE 381
Query: 409 AVPKLELFMELVGAVCLSVLGLLLPSVIEIIWRWGR-DIGPTHWIVWKNLVICLFAIIAM 233
+P L LF+ L+GA + + LL P IE++ + + ++ WI KN+V+ FA I
Sbjct: 382 LIPHLALFISLIGAFSGASMALLFPPCIELLTSYAKNELSTGLWI--KNIVLLTFAFIGF 439
Query: 232 VSGVTFAI 209
+G A+
Sbjct: 440 TTGTYSAL 447
>Z11505-1|CAA77582.1| 460|Caenorhabditis elegans Hypothetical
protein F59B2.2 protein.
Length = 460
Score = 46.0 bits (104), Expect = 2e-05
Identities = 35/145 (24%), Positives = 67/145 (46%), Gaps = 9/145 (6%)
Frame = -2
Query: 598 EVLAQTAKLLVACVMLLSFALIFYVPVDIAWRRIQDRIPAK---THRWAMS-GLRLFGTL 431
E L T + + LL ++ YV D+ + + + A+ +W G R+F L
Sbjct: 310 EGLYSTVNVFLMLQSLLGNSIAMYVVYDMFFNGFRRKFGARFPNVPKWLSDKGFRVFWVL 369
Query: 430 FIVGLACAVPKLELFMELVGAVCLSVLGLLLPSVIEIIWRWGRDIGPTHW-----IVWKN 266
+A +PKLE+ + LVG ++ L+ P E+I W G + ++ N
Sbjct: 370 VTYLMAVLIPKLEIMIPLVGVTSGALCALIFPPFFEMITFWTDWKGLLTYRQRMTKIFIN 429
Query: 265 LVICLFAIIAMVSGVTFAIKSMLEN 191
LV+ + A+++GV I +++++
Sbjct: 430 LVVMAIGVFAIIAGVYTNIHAIIQS 454
>AL031630-22|CAA20995.2| 454|Caenorhabditis elegans Hypothetical
protein Y38H6C.17 protein.
Length = 454
Score = 37.5 bits (83), Expect = 0.008
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Frame = -2
Query: 601 DEVLAQTAKLLVACVMLLSFALIFYVPVDIAWRRIQDRIPAKT---HRWAMSGLRLFGTL 431
+ VL+ T K L+ +LL AL ++ V + +Q ++ H+ LRL L
Sbjct: 307 NSVLSVTVKGLLVLKVLLGNALQLFIIVQMLLPSLQAKVSENRKLIHKILPYALRLSLML 366
Query: 430 FIVGLACAVPKLELFMELVGAVCLSVLGLLLPSVIEII 317
+ LA AVP L + VG ++ L++PS ++ I
Sbjct: 367 VSLSLALAVPNLTEIIPFVGITSGLLISLIIPSFLDCI 404
>AL034393-17|CAA22315.1| 503|Caenorhabditis elegans Hypothetical
protein Y18D10A.23 protein.
Length = 503
Score = 35.1 bits (77), Expect = 0.044
Identities = 16/41 (39%), Positives = 28/41 (68%)
Frame = -2
Query: 451 LRLFGTLFIVGLACAVPKLELFMELVGAVCLSVLGLLLPSV 329
+R F ++ A +V KL LF++LVGA ++++ +LLPS+
Sbjct: 348 VRTFILFLVMFTALSVLKLGLFLDLVGATTITLMTMLLPSI 388
>AL023828-24|CAD56604.1| 196|Caenorhabditis elegans Hypothetical
protein Y17G7B.21 protein.
Length = 196
Score = 31.9 bits (69), Expect = 0.41
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 309 HLQIISMTDGKSSPKTERQTAPTNSMKSSNFGTAQAKPTINRVPNS 446
H I T SP+T T+PT+S SS+ G+A+ +++ S
Sbjct: 17 HCSTIPSTSSSVSPRTSGATSPTSSTSSSSTGSARRVRRLSKTKKS 62
>Z97191-2|CAB10025.1| 481|Caenorhabditis elegans Hypothetical
protein H32K16.1 protein.
Length = 481
Score = 31.5 bits (68), Expect = 0.54
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Frame = -2
Query: 601 DEVLAQTAKLLVACVMLLSFALIFYVPVDIAWRRIQDRIPAK---THRWAMSGLRLFGTL 431
+ +L + K L+ + A+ YV V + ++ +I HR LRL L
Sbjct: 335 NSILTVSIKGLLVLKIFFGSAIQLYVIVQMLLPSLRSKISEDRKMVHRLLPYALRLGLML 394
Query: 430 FIVGLACAVPKLELFMELVGAVCLSVLGLLLPSVIE 323
+ +A VP L + LVG ++ L+LPS ++
Sbjct: 395 ISLCIALIVPNLMQIIPLVGITSGLLISLILPSFLD 430
>U00055-6|AAA50724.1| 494|Caenorhabditis elegans Hypothetical
protein R02F2.8 protein.
Length = 494
Score = 30.7 bits (66), Expect = 0.94
Identities = 21/107 (19%), Positives = 52/107 (48%), Gaps = 9/107 (8%)
Frame = -2
Query: 592 LAQTAKLLVACVMLLSFALIFYVPVDIAWRRIQDRIPAKTHRWAMSGLRLFGTLF--IVG 419
+ QT L++A ++ + ++ P+ + + ++P H++ + + LF ++
Sbjct: 289 IQQTVNLMIAVHVITTIVIVMSPPIQQVEQLL--KVP---HKFGVKRFLVRSILFWFVIF 343
Query: 418 LACAVPKLELFMELVGAVCLSVLGLLLPSVI-------EIIWRWGRD 299
+ ++P ++L+GA + ++ L+LP + EIIW G +
Sbjct: 344 IGLSIPHFGPVLDLIGASTMVLMTLILPPIFYLSIRTQEIIWLQGNE 390
>Z30423-12|CAA83006.2| 486|Caenorhabditis elegans Hypothetical
protein T20G5.6 protein.
Length = 486
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = -2
Query: 484 PAKTHR-WAMSGLRLFGTLFIVGLACAVPKLELFMELVGAVCLSVLGLLLPSVIEI 320
P K+ R WA++ LR+ LF + +A +VP L M LVG + ++L + P++ +
Sbjct: 386 PDKSLREWAVT-LRIILVLFTLFVALSVPYLVELMGLVGNITGTMLSFIWPALFHL 440
>AF031935-1|AAB87066.1| 486|Caenorhabditis elegans UNC-47 protein.
Length = 486
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = -2
Query: 484 PAKTHR-WAMSGLRLFGTLFIVGLACAVPKLELFMELVGAVCLSVLGLLLPSVIEI 320
P K+ R WA++ LR+ LF + +A +VP L M LVG + ++L + P++ +
Sbjct: 386 PDKSLREWAVT-LRIILVLFTLFVALSVPYLVELMGLVGNITGTMLSFIWPALFHL 440
>Z81076-2|CAB03051.3| 333|Caenorhabditis elegans Hypothetical
protein F35C5.2 protein.
Length = 333
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 289 THWIVWKNLVICLFAIIAMVSGVTFAIKSMLENL*FS 179
T WI+ N++ C F I GV + I+ M ++ FS
Sbjct: 19 TSWILRLNIIYCTFLSIGCFVGVAYCIRFMRKHPIFS 55
>Z50858-6|CAD44135.1| 949|Caenorhabditis elegans Hypothetical
protein F21A10.2c protein.
Length = 949
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +3
Query: 294 PMSLPHLQIISMTDGKSSPKTERQTAPTNSMKSSNFGTAQAKPTINRVPNSLNPDIAHL 470
PM+ P + ++ SSP T P + +NFG +P +PN ++ H+
Sbjct: 96 PMT-PAITDLTRHGSSSSPSTTNSDPPYSPEGLNNFGLGTQRPNHGVIPNDISNVPQHI 153
>U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type chloride
channel protein4, isoform a protein.
Length = 1050
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Frame = -2
Query: 415 ACAVPKLELFMELVGAVCLSVLG---LLLPSVIEIIWR---WGRDIGPTHWIVWKNLVIC 254
A +V +L LF L+G +C +LG + L + + R + + + HWIV+ ++ C
Sbjct: 374 AFSVDELPLFA-LLGLLC-GILGAGYISLYRCVVLFLRNNQYAKMVFQRHWIVYPIVISC 431
Query: 253 LFAIIAMVSGV 221
+F++++ G+
Sbjct: 432 IFSVVSYPHGL 442
>U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type chloride
channel protein4, isoform b protein.
Length = 1085
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Frame = -2
Query: 415 ACAVPKLELFMELVGAVCLSVLG---LLLPSVIEIIWR---WGRDIGPTHWIVWKNLVIC 254
A +V +L LF L+G +C +LG + L + + R + + + HWIV+ ++ C
Sbjct: 374 AFSVDELPLFA-LLGLLC-GILGAGYISLYRCVVLFLRNNQYAKMVFQRHWIVYPIVISC 431
Query: 253 LFAIIAMVSGV 221
+F++++ G+
Sbjct: 432 IFSVVSYPHGL 442
>AL021567-6|CAD44122.1| 949|Caenorhabditis elegans Hypothetical
protein F21A10.2c protein.
Length = 949
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +3
Query: 294 PMSLPHLQIISMTDGKSSPKTERQTAPTNSMKSSNFGTAQAKPTINRVPNSLNPDIAHL 470
PM+ P + ++ SSP T P + +NFG +P +PN ++ H+
Sbjct: 96 PMT-PAITDLTRHGSSSSPSTTNSDPPYSPEGLNNFGLGTQRPNHGVIPNDISNVPQHI 153
>AL021567-2|CAD44121.1| 947|Caenorhabditis elegans Hypothetical
protein F21A10.2b protein.
Length = 947
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +3
Query: 294 PMSLPHLQIISMTDGKSSPKTERQTAPTNSMKSSNFGTAQAKPTINRVPNSLNPDIAHL 470
PM+ P + ++ SSP T P + +NFG +P +PN ++ H+
Sbjct: 94 PMT-PAITDLTRHGSSSSPSTTNSDPPYSPEGLNNFGLGTQRPNHGVIPNDISNVPQHI 151
>AL021567-1|CAA16508.2| 898|Caenorhabditis elegans Hypothetical
protein F21A10.2a protein.
Length = 898
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +3
Query: 294 PMSLPHLQIISMTDGKSSPKTERQTAPTNSMKSSNFGTAQAKPTINRVPNSLNPDIAHL 470
PM+ P + ++ SSP T P + +NFG +P +PN ++ H+
Sbjct: 45 PMT-PAITDLTRHGSSSSPSTTNSDPPYSPEGLNNFGLGTQRPNHGVIPNDISNVPQHI 102
>AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type
chloride channel CLH-4b protein.
Length = 1084
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Frame = -2
Query: 415 ACAVPKLELFMELVGAVCLSVLG---LLLPSVIEIIWR---WGRDIGPTHWIVWKNLVIC 254
A +V +L LF L+G +C +LG + L + + R + + + HWIV+ ++ C
Sbjct: 374 AFSVDELPLFA-LLGLLC-GILGAGYISLYRCVVLFLRNNQYAKMVFQRHWIVYPIVISC 431
Query: 253 LFAIIAMVSGV 221
+F++++ G+
Sbjct: 432 IFSVVSYPHGL 442
>AF173173-1|AAF13166.1| 978|Caenorhabditis elegans CLC chloride
channel protein protein.
Length = 978
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Frame = -2
Query: 415 ACAVPKLELFMELVGAVCLSVLG---LLLPSVIEIIWR---WGRDIGPTHWIVWKNLVIC 254
A +V +L LF L+G +C +LG + L + + R + + + HWIV+ ++ C
Sbjct: 302 AFSVDELPLFA-LLGLLC-GILGAGYISLYRCVVLFLRNNQYAKMVFQRHWIVYPIVISC 359
Query: 253 LFAIIAMVSGV 221
+F++++ G+
Sbjct: 360 IFSVVSYPHGL 370
>AF125971-6|AAP86613.1| 176|Caenorhabditis elegans Hypothetical
protein Y4C6B.2b protein.
Length = 176
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = -2
Query: 466 WAMSGLRLFGTLFIVGLACAVPKLELFMELVGAVCLSVLGLLLPSVIEI 320
W R L +V +A +VP + ++LVG ++++ L++P V +
Sbjct: 7 WQRIVARALVMLSVVFVAESVPNFGVLLDLVGGSTITMMALVVPIVFNL 55
>AF125971-5|AAD14765.1| 484|Caenorhabditis elegans Hypothetical
protein Y4C6B.2a protein.
Length = 484
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = -2
Query: 466 WAMSGLRLFGTLFIVGLACAVPKLELFMELVGAVCLSVLGLLLPSVIEI 320
W R L +V +A +VP + ++LVG ++++ L++P V +
Sbjct: 315 WQRIVARALVMLSVVFVAESVPNFGVLLDLVGGSTITMMALVVPIVFNL 363
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,111,114
Number of Sequences: 27780
Number of extensions: 267838
Number of successful extensions: 821
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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