Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13b06
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0126 - 7031739-7031861,7032187-7032272,7033277-7033421,703...    31   1.1  
02_05_0608 + 30329174-30329362,30329681-30329907,30330035-303301...    29   2.6  
05_06_0057 + 25253497-25253589,25253722-25253799,25254583-252546...    28   8.0  
03_02_0758 + 10954268-10954841,10955988-10957145,10957176-109572...    28   8.0  

>02_02_0126 -
           7031739-7031861,7032187-7032272,7033277-7033421,
           7033504-7033749
          Length = 199

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = -2

Query: 640 LEARCVKLRAQQEAREYRKMTKGVDNVRMRFPEDSISYQLKQVNRQLIAIGQFIISI-FA 464
           L+AR  KLR  QE +EY ++ + V       P    S +L    +  I  G  ++ I F 
Sbjct: 86  LKARLDKLREMQERKEYAELVRDVAP-----PAKEDSPELFSSYKDQIGFGLHVVLIMFT 140

Query: 463 GFLFGF 446
           G+L GF
Sbjct: 141 GYLVGF 146


>02_05_0608 +
           30329174-30329362,30329681-30329907,30330035-30330190,
           30330893-30331078,30331184-30331368,30331571-30331602
          Length = 324

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 23/71 (32%), Positives = 37/71 (52%)
 Frame = -2

Query: 550 FPEDSISYQLKQVNRQLIAIGQFIISIFAGFLFGFKGVEWMIGSLDFGFRLLLGVMCALV 371
           +P+  I ++LK V   + A G +  SIFA     F    W I   DFG  ++  V+  ++
Sbjct: 133 WPDQRIKFKLKLV--YMYAAGFYTYSIFA---LQF----WEIKRSDFGISMVHHVVSVIL 183

Query: 370 IALAEIYFLAK 338
           IAL+ I+  A+
Sbjct: 184 IALSYIFRFAR 194


>05_06_0057 +
           25253497-25253589,25253722-25253799,25254583-25254621,
           25254724-25255263,25255352-25255450,25255614-25255691,
           25255961-25256146,25256240-25256365
          Length = 412

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 363 SAITNAHITPRRRRNPKSKLPIIHSTPLNPKRNP 464
           SA    H++ +    P S +PI+HS P  P +NP
Sbjct: 165 SATLPPHVSSQYSNIP-SHMPIVHSQPQQPLQNP 197


>03_02_0758 +
           10954268-10954841,10955988-10957145,10957176-10957216,
           10957412-10957448,10957534-10957954,10958201-10958234
          Length = 754

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 394 LGVMCALVIALA-EIYFLAKKLNEELNIPETVQLGGPPKFVDAKK 263
           +GV+CA    LA +IY  AKK  +  N+      GG  KF   K+
Sbjct: 294 IGVVCAPTRELAHQIYLEAKKFAKPYNLRVAAVYGGVSKFDQFKE 338


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,304,392
Number of Sequences: 37544
Number of extensions: 253892
Number of successful extensions: 552
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)