Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13b06
(686 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY084172-1|AAL89910.1| 302|Drosophila melanogaster RE40914p pro... 142 3e-34
AE014297-3130|AAS65195.1| 302|Drosophila melanogaster CG7071-PB... 142 3e-34
AE014297-3129|AAF55976.2| 302|Drosophila melanogaster CG7071-PA... 142 3e-34
AY075181-1|AAL68051.1| 497|Drosophila melanogaster AT12868p pro... 30 3.4
AE014134-2677|AAN10932.1| 497|Drosophila melanogaster CG31819-P... 30 3.4
AF145635-1|AAD38610.1| 850|Drosophila melanogaster BcDNA.GH0706... 29 7.9
AE014297-4200|AAN14133.1| 757|Drosophila melanogaster CG5508-PB... 29 7.9
AE014297-4199|AAN14132.1| 786|Drosophila melanogaster CG5508-PC... 29 7.9
AE014297-4197|AAF56761.1| 850|Drosophila melanogaster CG5508-PA... 29 7.9
>AY084172-1|AAL89910.1| 302|Drosophila melanogaster RE40914p
protein.
Length = 302
Score = 142 bits (345), Expect = 3e-34
Identities = 67/105 (63%), Positives = 85/105 (80%)
Frame = -2
Query: 640 LEARCVKLRAQQEAREYRKMTKGVDNVRMRFPEDSISYQLKQVNRQLIAIGQFIISIFAG 461
LEARC +LRA+Q+ R+Y KMTK VD +PED+ISYQ+K +N+Q+IA+ QFI S+ AG
Sbjct: 161 LEARCQRLRAEQQNRDYLKMTKNVDAGLKHYPEDTISYQIKSLNKQIIAVVQFIFSVAAG 220
Query: 460 FLFGFKGVEWMIGSLDFGFRLLLGVMCALVIALAEIYFLAKKLNE 326
F FGF GV M+G L FGFR+LLGV+ AL+IALAE+YFLAKKL+E
Sbjct: 221 FTFGFFGVNLMVGPLPFGFRILLGVIVALIIALAEMYFLAKKLHE 265
>AE014297-3130|AAS65195.1| 302|Drosophila melanogaster CG7071-PB,
isoform B protein.
Length = 302
Score = 142 bits (345), Expect = 3e-34
Identities = 67/105 (63%), Positives = 85/105 (80%)
Frame = -2
Query: 640 LEARCVKLRAQQEAREYRKMTKGVDNVRMRFPEDSISYQLKQVNRQLIAIGQFIISIFAG 461
LEARC +LRA+Q+ R+Y KMTK VD +PED+ISYQ+K +N+Q+IA+ QFI S+ AG
Sbjct: 161 LEARCQRLRAEQQNRDYLKMTKNVDAGLKHYPEDTISYQIKSLNKQIIAVVQFIFSVAAG 220
Query: 460 FLFGFKGVEWMIGSLDFGFRLLLGVMCALVIALAEIYFLAKKLNE 326
F FGF GV M+G L FGFR+LLGV+ AL+IALAE+YFLAKKL+E
Sbjct: 221 FTFGFFGVNLMVGPLPFGFRILLGVIVALIIALAEMYFLAKKLHE 265
>AE014297-3129|AAF55976.2| 302|Drosophila melanogaster CG7071-PA,
isoform A protein.
Length = 302
Score = 142 bits (345), Expect = 3e-34
Identities = 67/105 (63%), Positives = 85/105 (80%)
Frame = -2
Query: 640 LEARCVKLRAQQEAREYRKMTKGVDNVRMRFPEDSISYQLKQVNRQLIAIGQFIISIFAG 461
LEARC +LRA+Q+ R+Y KMTK VD +PED+ISYQ+K +N+Q+IA+ QFI S+ AG
Sbjct: 161 LEARCQRLRAEQQNRDYLKMTKNVDAGLKHYPEDTISYQIKSLNKQIIAVVQFIFSVAAG 220
Query: 460 FLFGFKGVEWMIGSLDFGFRLLLGVMCALVIALAEIYFLAKKLNE 326
F FGF GV M+G L FGFR+LLGV+ AL+IALAE+YFLAKKL+E
Sbjct: 221 FTFGFFGVNLMVGPLPFGFRILLGVIVALIIALAEMYFLAKKLHE 265
>AY075181-1|AAL68051.1| 497|Drosophila melanogaster AT12868p
protein.
Length = 497
Score = 29.9 bits (64), Expect = 3.4
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = -2
Query: 355 IYFLAKKLNEELNIPETVQLGGPPKFVDAKKNEYLVKEPKKSTDKEHQE 209
+YF+A +L E LN+ ++ G V ++ E L++E KS+ ++ E
Sbjct: 149 VYFVADRLQENLNV---LEKAGVKSIVSVQRCELLMEEKVKSSSQQSGE 194
>AE014134-2677|AAN10932.1| 497|Drosophila melanogaster CG31819-PA
protein.
Length = 497
Score = 29.9 bits (64), Expect = 3.4
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = -2
Query: 355 IYFLAKKLNEELNIPETVQLGGPPKFVDAKKNEYLVKEPKKSTDKEHQE 209
+YF+A +L E LN+ ++ G V ++ E L++E KS+ ++ E
Sbjct: 149 VYFVADRLQENLNV---LEKAGVKSIVSVQRCELLMEEKVKSSSQQSGE 194
>AF145635-1|AAD38610.1| 850|Drosophila melanogaster BcDNA.GH07066
protein.
Length = 850
Score = 28.7 bits (61), Expect = 7.9
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = +2
Query: 524 LIGNTVFWKSHSNIIYSFSHFSVFSCFLLSSKFHTSCF*TGFLLSTLF 667
L G V + H N+I S S VF C +S T+ FLL T F
Sbjct: 475 LYGTDVVCEEHRNLIESISRQVVFDCAAATSVMSTNAL--AFLLLTRF 520
>AE014297-4200|AAN14133.1| 757|Drosophila melanogaster CG5508-PB,
isoform B protein.
Length = 757
Score = 28.7 bits (61), Expect = 7.9
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = +2
Query: 524 LIGNTVFWKSHSNIIYSFSHFSVFSCFLLSSKFHTSCF*TGFLLSTLF 667
L G V + H N+I S S VF C +S T+ FLL T F
Sbjct: 382 LYGTDVVCEEHRNLIESISRQVVFDCAAATSVMSTNAL--AFLLLTRF 427
>AE014297-4199|AAN14132.1| 786|Drosophila melanogaster CG5508-PC,
isoform C protein.
Length = 786
Score = 28.7 bits (61), Expect = 7.9
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = +2
Query: 524 LIGNTVFWKSHSNIIYSFSHFSVFSCFLLSSKFHTSCF*TGFLLSTLF 667
L G V + H N+I S S VF C +S T+ FLL T F
Sbjct: 411 LYGTDVVCEEHRNLIESISRQVVFDCAAATSVMSTNAL--AFLLLTRF 456
>AE014297-4197|AAF56761.1| 850|Drosophila melanogaster CG5508-PA,
isoform A protein.
Length = 850
Score = 28.7 bits (61), Expect = 7.9
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = +2
Query: 524 LIGNTVFWKSHSNIIYSFSHFSVFSCFLLSSKFHTSCF*TGFLLSTLF 667
L G V + H N+I S S VF C +S T+ FLL T F
Sbjct: 475 LYGTDVVCEEHRNLIESISRQVVFDCAAATSVMSTNAL--AFLLLTRF 520
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,021,221
Number of Sequences: 53049
Number of extensions: 463277
Number of successful extensions: 1056
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 3013199100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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