Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13b06
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U37429-7|AAA79351.2|  218|Caenorhabditis elegans Hypothetical pr...    59   3e-09
AF040647-6|AAR30205.3|  436|Caenorhabditis elegans Hypothetical ...    28   7.2  

>U37429-7|AAA79351.2|  218|Caenorhabditis elegans Hypothetical
           protein F09E5.11 protein.
          Length = 218

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 29/103 (28%), Positives = 58/103 (56%), Gaps = 5/103 (4%)
 Frame = -2

Query: 622 KLRAQQEAREYRKMTKGVDNVRMRFPED---SISYQLKQVNRQLIAIGQFIISIFAGFLF 452
           +LR QQE   Y+++ + VD V+     D   +   +++ VNRQ+I++   +I++   F F
Sbjct: 88  ELRIQQEQDSYKRLIRDVDPVQKYGKTDHMENFGVEMRAVNRQMISVINVVITVVGSFFF 147

Query: 451 GFKGVEWMIG--SLDFGFRLLLGVMCALVIALAEIYFLAKKLN 329
           GF G+ +     +LD   R + G++ A ++   ++YF+ K ++
Sbjct: 148 GFSGITYAYPHLNLDLPTRFIFGLVPATIVFFCDLYFVVKGMD 190


>AF040647-6|AAR30205.3|  436|Caenorhabditis elegans Hypothetical
           protein F54D12.7 protein.
          Length = 436

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
 Frame = +2

Query: 527 IGNTVFWKSHSNI----IYSFSHFSVFSCFLLSSKFHTSCF--*TGFLLSTLF 667
           I    F+KS SNI    I SF    +FSCFL S +   +CF   T  ++STLF
Sbjct: 359 ISRIYFFKSSSNISKYSILSFVFQKIFSCFLSSLE---TCFLKTTKPVISTLF 408


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,567,836
Number of Sequences: 27780
Number of extensions: 262628
Number of successful extensions: 679
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)