Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13b06
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.89 
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   2.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   3.6  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 372 TNAHITPRRRRNPKSKLPIIHSTPLNPKRNPANIEIMNCP 491
           ++ H TP    +  +     HSTPL     PA I+I + P
Sbjct: 424 SHIHATPHHHHSHAATPHHQHSTPLAHSSYPAAIQIGHTP 463


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = -2

Query: 490 GQFIISIFAGFLFGFKGVEWMIGSLDFGFRLLLGVMCALVIALAEIYFLAKKL 332
           G   I +FA   +         G L  G   LLG+ C  V+ LA   F+   +
Sbjct: 351 GIIAIGLFADNPYPLNTTNGRKGLLKGGGGYLLGIQCLTVVCLAFWSFIVSTI 403


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -1

Query: 50  YLVYFSYID*ENILFL 3
           Y +Y S ID ENILFL
Sbjct: 803 YDIYASSIDKENILFL 818


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
 Frame = -2

Query: 397 LLG--VMCALVIALAEIYFLAKKLNEELNIPETVQLGGPPK--FVDAKKNEYLVKEPKKS 230
           LLG  ++  +V+    +      LN     P T ++    +  F+       L++ PKK 
Sbjct: 298 LLGKYLLFTMVLVTLSVVVTIAVLNVNFRSPVTHRMARWVRVVFIQVLPRFLLIERPKKD 357

Query: 229 TDKEHQE 209
            D+E +E
Sbjct: 358 EDEEEEE 364


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,068
Number of Sequences: 438
Number of extensions: 3391
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)