Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13b04
(663 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces... 303 1e-83
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 29 0.60
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 28 1.4
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 3.2
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.6
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 5.6
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 25 7.4
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 7.4
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 25 9.7
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S... 25 9.7
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb... 25 9.7
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc... 25 9.7
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 25 9.7
>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 249
Score = 303 bits (745), Expect = 1e-83
Identities = 148/209 (70%), Positives = 171/209 (81%)
Frame = -1
Query: 660 DGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVV 481
DGVF AELNEF TREL+E+GYSG EVRVTP RSEIII AT TQ VLGEKGRRIRELT++V
Sbjct: 16 DGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLGEKGRRIRELTALV 75
Query: 480 QKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARG 301
QKRF E +VELYAEKV RGLCA+AQ ESLRYKL+ GLAVRRA YGVLR++ME+GA+G
Sbjct: 76 QKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAYGVLRYVMEAGAKG 135
Query: 300 CEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWD 121
CEVV+SGKLR RAKSMKF DG MIHSG P D++++ATRHVLLRQGVLG+KVKIMLP
Sbjct: 136 CEVVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLLRQGVLGVKVKIMLP-- 193
Query: 120 QQGKNGPKKPQPDHILVTEPKDEPVPLEP 34
+ K KK PD ++V +PK+E +P
Sbjct: 194 -EPKTRQKKSLPDIVVVLDPKEEEPITKP 221
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 29.1 bits (62), Expect = 0.60
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Frame = -3
Query: 163 RSTRNQGQNHVAVGPAR----QERPEEATTRPHPGDRAQGRARAPRADQRSALPRAR 5
R T+ Q + V R QE EE+T P ++ GR+R R ALP R
Sbjct: 532 RVTKTQSRRETKVKRRRKARIQETSEESTVVNEPNEKPDGRSRRERKKVNYALPGLR 588
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -1
Query: 333 LRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRH 178
+ F ME + + ++ +L+ S K D ++I GD ND + T+ RH
Sbjct: 1868 IHFAMEFLHKNTKSLLDSELKDGNYISAKGKDVIVIGGGDTGNDCLGTSVRH 1919
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 3.2
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = -1
Query: 549 MATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAI-AQAESLRYKL 373
MATR Q RR E + +QK +N + ++EL E+V G + + + RY +
Sbjct: 726 MATRIQRAWRSYVRRRSEAAACIQKLWNRNKVNMEL--ERVRNEGTKLLQGKKQRRRYSI 783
Query: 372 IG 367
+G
Sbjct: 784 LG 785
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -3
Query: 268 STCQINEVCR-WTHDPLWRPLQ*LRQHCYQT 179
+ C + CR W P W+ + + Q+C+ T
Sbjct: 1420 TVCNRKKACRLWNFKPHWQVITRIPQYCHDT 1450
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/31 (29%), Positives = 15/31 (48%)
Frame = -1
Query: 93 PQPDHILVTEPKDEPVPLEPTSEVRSLAPAP 1
P P ++V P P+P+ P + + P P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPP 764
>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 471
Score = 25.4 bits (53), Expect = 7.4
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Frame = +1
Query: 235 SIYKLH*FGTLTTQLARYNNFTTTGARFHDETENTIASTTYSETSDKLVS*RFGLG--DS 408
S+Y + T+ LA+YN E I+ST S V R LG
Sbjct: 296 SVYSTMAYAEATSNLAKYNTIAFGNCLDEKFEEEIISSTARSFFLGDEVKKRLLLGAYSL 355
Query: 409 AKTTSSHLFS 438
A+ SS LFS
Sbjct: 356 ARMNSSDLFS 365
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -1
Query: 60 KDEPVPLEPTSEVRSLA 10
K+ PVPLEP EV +LA
Sbjct: 563 KNNPVPLEPLVEVDALA 579
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -1
Query: 159 VLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSEVRSL 13
VLG +KI W K+ P+K + I + P+ L P+SE +++
Sbjct: 61 VLGYSIKISPVWTYNLKDVPEK-ETMSIWIVTPQRRYGILSPSSEYKAI 108
>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 431 FSAYNSTDCSGMLNRFCTTEVSSR 502
+ +Y S+DC G+L+R T+ R
Sbjct: 360 YPSYLSSDCKGLLSRMLVTDPLKR 383
>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -1
Query: 270 GQRAKSMKFVDGLMIHSGDPCNDYVN 193
G+R K + F D H G P DY++
Sbjct: 218 GRREKLLVFGDDYDSHDGTPIRDYIH 243
>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 878
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 445 FYRLLWNVESLLYYGSQL 498
FYRL W + +LY SQ+
Sbjct: 643 FYRLCWKDKGILYQDSQI 660
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +2
Query: 371 ISLYLRDSAWAIAQRPRVATFSAYNSTDCSGMLNRFCTTEVSSRILRPFSPST 529
+ L L+ A+ ++ S+ +N F T SSR L PFS +T
Sbjct: 101 VRLPLKSDIEAVKSPKAISHLEEKKSSPKEKKVNPFAITSESSRGLNPFSDAT 153
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,786,595
Number of Sequences: 5004
Number of extensions: 59053
Number of successful extensions: 148
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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