Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13b04
(663 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal prote... 343 7e-95
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ... 29 2.2
Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical pr... 29 2.9
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr... 28 5.1
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int... 28 5.1
AF000261-3|AAB52924.1| 464|Caenorhabditis elegans Hypothetical ... 28 5.1
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p... 28 6.8
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p... 28 6.8
Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 28 6.8
U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical pr... 28 6.8
U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical pr... 28 6.8
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 28 6.8
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 28 6.8
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 28 6.8
>U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 3 protein.
Length = 247
Score = 343 bits (843), Expect = 7e-95
Identities = 160/211 (75%), Positives = 185/211 (87%)
Frame = -1
Query: 657 GVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQ 478
G+FKAELN FL +ELAEDGYSGVEVR TP R+E+IIMATRTQ+VLGE+GRRI+ELTSVVQ
Sbjct: 17 GIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNVLGERGRRIKELTSVVQ 76
Query: 477 KRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGC 298
KRF E SVELYAEKV+ RGLCA+AQ ESLRYKL+GGLAVRRACYGVLRFIMESGA+G
Sbjct: 77 KRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRACYGVLRFIMESGAQGV 136
Query: 297 EVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQ 118
EV+VSGKLRGQRAK+MKFVDGLMIHSG P NDY+ A RHV LRQGV+GIKVKIMLP+D
Sbjct: 137 EVIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLRQGVIGIKVKIMLPYDP 196
Query: 117 QGKNGPKKPQPDHILVTEPKDEPVPLEPTSE 25
+G+NGP+ PDH+ + EP++E +P EP S+
Sbjct: 197 RGQNGPRNALPDHVQIVEPQEEVLPKEPHSQ 227
>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
protein Y18D10A.1 protein.
Length = 1634
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = -1
Query: 537 TQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATR 418
+ S+ G+KG+ +REL + + K ++ E++ + AE A R
Sbjct: 396 SSSIHGKKGKTVRELQTEMMKGESVKEKAARMRAEASAGR 435
>Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical
protein M88.5b protein.
Length = 704
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = -1
Query: 615 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 454
L G G + IR+E+ + ++G+ G+ +REL + IPE+
Sbjct: 543 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 596
>Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical
protein M88.5a protein.
Length = 828
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = -1
Query: 615 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 454
L G G + IR+E+ + ++G+ G+ +REL + IPE+
Sbjct: 667 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 720
>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
F57F4.4 protein.
Length = 2090
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -3
Query: 196 QHCYQTCASQARSTRNQGQNHVA 128
Q CY CAS ST Q QNH A
Sbjct: 1799 QGCYGDCASITISTTIQNQNHTA 1821
>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 1 protein.
Length = 2153
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -3
Query: 196 QHCYQTCASQARSTRNQGQNHVA 128
Q CY CAS ST Q QNH A
Sbjct: 1799 QGCYGDCASITISTTIQNQNHTA 1821
>AF000261-3|AAB52924.1| 464|Caenorhabditis elegans Hypothetical
protein F19B10.4 protein.
Length = 464
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = -3
Query: 196 QHCYQTCASQARSTRNQGQNHVAVGPARQERPEEATTRPHPGDRAQGRARAPRAD 32
Q C Q S +S N + GPA++ RPE P DR + + R D
Sbjct: 113 QSCLQNELSALKSANNAMKTSKN-GPAKEHRPENGKLSPETLDRGKEENQEGRQD 166
>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = -1
Query: 93 PQPDHILVTEPKDEPVPL---EPTSE 25
P+P+ ++++EP EPVP+ EP E
Sbjct: 1647 PEPEPVVISEPVPEPVPIVVEEPPKE 1672
>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = -1
Query: 93 PQPDHILVTEPKDEPVPL---EPTSE 25
P+P+ ++++EP EPVP+ EP E
Sbjct: 1647 PEPEPVVISEPVPEPVPIVVEEPPKE 1672
>Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical
protein R11A8.7d protein.
Length = 1427
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = -1
Query: 93 PQPDHILVTEPKDEPVPL---EPTSE 25
P+P+ ++++EP EPVP+ EP E
Sbjct: 468 PEPEPVVISEPVPEPVPIVVEEPPKE 493
>Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical
protein R11A8.7c protein.
Length = 1405
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = -1
Query: 93 PQPDHILVTEPKDEPVPL---EPTSE 25
P+P+ ++++EP EPVP+ EP E
Sbjct: 468 PEPEPVVISEPVPEPVPIVVEEPPKE 493
>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
R11A8.7b protein.
Length = 2584
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = -1
Query: 93 PQPDHILVTEPKDEPVPL---EPTSE 25
P+P+ ++++EP EPVP+ EP E
Sbjct: 1647 PEPEPVVISEPVPEPVPIVVEEPPKE 1672
>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
R11A8.7a protein.
Length = 2606
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = -1
Query: 93 PQPDHILVTEPKDEPVPL---EPTSE 25
P+P+ ++++EP EPVP+ EP E
Sbjct: 1647 PEPEPVVISEPVPEPVPIVVEEPPKE 1672
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 169 QARSTRNQGQNHVAVGPARQERPEEATTRP--HPGDRAQGRA 50
Q + R Q GP RQ++P++ + +P PG + QG++
Sbjct: 553 QGPAPRGAPQKPFYQGPPRQQQPQQHSQQPAQQPGQQGQGQS 594
>U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical
protein B0496.3a protein.
Length = 1551
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 50 GSSLGSVTRMWSGCGFFGPFLPCWSHGNMILTLI 151
GS L + + +G + GP + CWS G ++ TL+
Sbjct: 234 GSPLYASPEIINGTPYKGPEVDCWSLGILLYTLV 267
>U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical
protein B0496.3b protein.
Length = 1592
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 50 GSSLGSVTRMWSGCGFFGPFLPCWSHGNMILTLI 151
GS L + + +G + GP + CWS G ++ TL+
Sbjct: 234 GSPLYASPEIINGTPYKGPEVDCWSLGILLYTLV 267
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +2
Query: 2 GAGARERTSLVGSRGTGSSLGSVTRMWSGCGFFGP 106
G GA R G G SSL S + G GF GP
Sbjct: 590 GGGAPRRPFTNGGFGAHSSLSSTSNSGGGGGFSGP 624
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +2
Query: 2 GAGARERTSLVGSRGTGSSLGSVTRMWSGCGFFGP 106
G GA R G G SSL S + G GF GP
Sbjct: 574 GGGAPRRPFTNGGFGAHSSLSSTSNSGGGGGFSGP 608
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +2
Query: 2 GAGARERTSLVGSRGTGSSLGSVTRMWSGCGFFGP 106
G GA R G G SSL S + G GF GP
Sbjct: 571 GGGAPRRPFTNGGFGAHSSLSSTSNSGGGGGFSGP 605
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,731,786
Number of Sequences: 27780
Number of extensions: 353041
Number of successful extensions: 1268
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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