Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13b01
         (594 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK128348-1|BAC87394.1|  129|Homo sapiens protein ( Homo sapiens ...    37   0.047
U72788-1|AAD08631.1|  295|Homo sapiens SP2 metalloprotease protein.    31   2.3  
AF019612-1|AAC51937.1|  519|Homo sapiens S2P protein.                  31   2.3  
BC132774-1|AAI32775.1|  622|Homo sapiens KIAA1467 protein.             29   9.4  
BC132772-1|AAI32773.1|  622|Homo sapiens KIAA1467 protein.             29   9.4  
BC039267-1|AAH39267.1|  622|Homo sapiens KIAA1467 protein.             29   9.4  
AK125278-1|BAC86111.1|  622|Homo sapiens protein ( Homo sapiens ...    29   9.4  
AB040900-1|BAA95991.1|  432|Homo sapiens KIAA1467 protein protein.     29   9.4  

>AK128348-1|BAC87394.1|  129|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46490 fis, clone THYMU3027540. ).
          Length = 129

 Score = 37.1 bits (82), Expect = 0.047
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 22  MYSYYMCGSNTYTYFNNSCIFTQN*IAYNIFYCYYSNHL 138
           MY Y +C S+TY Y  + C++  +   Y    C Y  H+
Sbjct: 1   MYMYVLCISHTYVYITHICMYITHICVYQTHVCVYHTHM 39


>U72788-1|AAD08631.1|  295|Homo sapiens SP2 metalloprotease protein.
          Length = 295

 Score = 31.5 bits (68), Expect = 2.3
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
 Frame = -2

Query: 341 KTSSSSACISPLLD-----VNLSHSPPQ*TILYLSHPI 243
           K+SSSS CI P L+     + + H PPQ  +LY+ HP+
Sbjct: 155 KSSSSSFCIIPSLETHTRLIKVKH-PPQIDMLYVGHPL 191


>AF019612-1|AAC51937.1|  519|Homo sapiens S2P protein.
          Length = 519

 Score = 31.5 bits (68), Expect = 2.3
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
 Frame = -2

Query: 341 KTSSSSACISPLLD-----VNLSHSPPQ*TILYLSHPI 243
           K+SSSS CI P L+     + + H PPQ  +LY+ HP+
Sbjct: 379 KSSSSSFCIIPSLETHTRLIKVKH-PPQIDMLYVGHPL 415


>BC132774-1|AAI32775.1|  622|Homo sapiens KIAA1467 protein.
          Length = 622

 Score = 29.5 bits (63), Expect = 9.4
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = -2

Query: 314 SPLLDVNLSHSPPQ*TILYLSHPIFSSIL 228
           SP  D+ L   PP    LYL HP F SIL
Sbjct: 505 SPNSDIILGTEPPSLHHLYLLHPAFPSIL 533


>BC132772-1|AAI32773.1|  622|Homo sapiens KIAA1467 protein.
          Length = 622

 Score = 29.5 bits (63), Expect = 9.4
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = -2

Query: 314 SPLLDVNLSHSPPQ*TILYLSHPIFSSIL 228
           SP  D+ L   PP    LYL HP F SIL
Sbjct: 505 SPNSDIILGTEPPSLHHLYLLHPAFPSIL 533


>BC039267-1|AAH39267.1|  622|Homo sapiens KIAA1467 protein.
          Length = 622

 Score = 29.5 bits (63), Expect = 9.4
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = -2

Query: 314 SPLLDVNLSHSPPQ*TILYLSHPIFSSIL 228
           SP  D+ L   PP    LYL HP F SIL
Sbjct: 505 SPNSDIILGTEPPSLHHLYLLHPAFPSIL 533


>AK125278-1|BAC86111.1|  622|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43288 fis, clone MESAN2012054. ).
          Length = 622

 Score = 29.5 bits (63), Expect = 9.4
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = -2

Query: 314 SPLLDVNLSHSPPQ*TILYLSHPIFSSIL 228
           SP  D+ L   PP    LYL HP F SIL
Sbjct: 505 SPNSDIILGTEPPSLHHLYLLHPAFPSIL 533


>AB040900-1|BAA95991.1|  432|Homo sapiens KIAA1467 protein protein.
          Length = 432

 Score = 29.5 bits (63), Expect = 9.4
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = -2

Query: 314 SPLLDVNLSHSPPQ*TILYLSHPIFSSIL 228
           SP  D+ L   PP    LYL HP F SIL
Sbjct: 315 SPNSDIILGTEPPSLHHLYLLHPAFPSIL 343


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,276,217
Number of Sequences: 237096
Number of extensions: 1402038
Number of successful extensions: 1943
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1943
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6268037466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)