Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13b01
         (594 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    22   5.2  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   5.2  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   5.2  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   5.2  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   5.2  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   6.9  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   9.1  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   9.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.1  

>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 230 ICWKKLDAKGRGSFIVADYG 289
           I W K D +GR   I  +YG
Sbjct: 46  IAWMKFDKEGRLRAINPEYG 65


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -3

Query: 145 FNLDDWNSNNKKYYMLFNFV 86
           +N +++N+N KK Y   N++
Sbjct: 100 YNNNNYNNNCKKLYYNINYI 119


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -3

Query: 145 FNLDDWNSNNKKYYMLFNFV 86
           +N +++N+N KK Y   N++
Sbjct: 100 YNNNNYNNNCKKLYYNINYI 119


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -3

Query: 145 FNLDDWNSNNKKYYMLFNFV 86
           +N +++N+N KK Y   N++
Sbjct: 100 YNNNNYNNNCKKLYYNINYI 119


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -3

Query: 145 FNLDDWNSNNKKYYMLFNFV 86
           +N +++N+N KK Y   N++
Sbjct: 100 YNNNNYNNNCKKLYYNINYI 119


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 159 NELSTSI*MIGIVTIKNIICYLI 91
           NE+  SI   G + +K  +C++I
Sbjct: 209 NEIIRSIQGTGTIILKKTVCFVI 231


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 46  SNTYTYFNNSCIFTQN*IAYNIFYCYY 126
           SN Y Y NN+  +  N     ++Y  Y
Sbjct: 319 SNNYNYNNNNYKYNYNNYNKKLYYKNY 345


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +1

Query: 13  RFLMYSYYMCGSNTYTYFNNSCIFTQN*IAYNIFY 117
           ++  Y+ Y    N Y  +NN+       + YNI Y
Sbjct: 323 KYSNYNNYNNNYNNYNNYNNNYNNNYKKLYYNINY 357


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -2

Query: 593 GIAAXWYWITXVVSG 549
           G  A W WI   +SG
Sbjct: 382 GCPADWLWIVPPISG 396


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,827
Number of Sequences: 438
Number of extensions: 3656
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)