Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13a23
         (203 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ...    25   1.0  
SPBC146.11c |mug97|meu33|meiotically upregulated gene Mug97|Schi...    24   2.4  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    23   4.2  
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ...    23   4.2  
SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase |Schizosac...    23   5.5  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    23   5.5  
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb...    23   7.3  

>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 161 ILAFGAYWTTKYLMSSPDNNF 99
           +L F AY+  +   +SPDNN+
Sbjct: 56  LLVFAAYYVLRKPRTSPDNNY 76


>SPBC146.11c |mug97|meu33|meiotically upregulated gene
           Mug97|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 192 NGVRISTYHRYFSVWSL 142
           N VR+  YH+++S W L
Sbjct: 166 NQVRVCLYHKHYSRWYL 182


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 200 GSKMALGFLLITGILAF 150
           GS+++LGF LIT  + F
Sbjct: 407 GSQLSLGFQLITSCITF 423


>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -3

Query: 174 TYHRYFSVWSLL 139
           TYHR+FS+ SL+
Sbjct: 55  TYHRFFSILSLV 66


>SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 205

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 4   YLQVILNSTVLRYNSPG 54
           Y+  +++ST + YN PG
Sbjct: 112 YVGTVMDSTTVMYNDPG 128


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 88  LSCRQRCPQRYHPGCYSVI 32
           LSC Q+CP   HP C  ++
Sbjct: 221 LSC-QKCPLSIHPLCNRIL 238


>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 19  LNSTVLRYNSPGGS 60
           LN+ +LRY +PGG+
Sbjct: 179 LNAALLRYFNPGGA 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 798,619
Number of Sequences: 5004
Number of extensions: 11715
Number of successful extensions: 22
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 47
effective length of database: 2,127,290
effective search space used: 42545800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)