Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13a23
         (203 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0294 + 42571700-42573373,42573653-42573720,42573785-425738...    27   2.8  
03_05_0541 + 25381403-25382077,25382555-25383904,25386267-253864...    26   4.8  
03_05_1122 + 30546314-30549277,30549615-30549693,30549857-305499...    25   8.4  

>01_07_0294 +
           42571700-42573373,42573653-42573720,42573785-42573819,
           42573988-42574061,42574491-42574726,42574958-42575044,
           42575356-42575455,42575584-42576003
          Length = 897

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 91  QLSCRQRCPQRYHPGCYSV 35
           QL C   CP  +HP C ++
Sbjct: 539 QLLCCDTCPSTFHPDCLAI 557


>03_05_0541 +
           25381403-25382077,25382555-25383904,25386267-25386402,
           25386642-25387126
          Length = 881

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +1

Query: 34  LRYNSPGGS-VEDIVVGMTVVEEKLLSGLLIKYFVVQ*APNAKIPVISRNPNAILLP 201
           LRY   G S VE  +V M  ++E      + K  + Q APNA + V+   P A  LP
Sbjct: 493 LRYAEEGASSVEVYIVAMQALQEAANKVNMAKRGIGQVAPNAPLAVM---PIAAQLP 546


>03_05_1122 + 30546314-30549277,30549615-30549693,30549857-30549945,
            30550422-30550538,30550873-30551111,30552279-30552365,
            30552732-30552831,30553319-30553532,30553617-30553777
          Length = 1349

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 85   SCRQRCPQRYHPGC 44
            +C Q C ++YHPGC
Sbjct: 1007 TCSQ-CEEKYHPGC 1019


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,891,071
Number of Sequences: 37544
Number of extensions: 69335
Number of successful extensions: 142
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 14,793,348
effective HSP length: 47
effective length of database: 13,028,780
effective search space used: 260575600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)