Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13a23
         (203 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   0.16 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    19   5.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    19   5.9  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    19   7.8  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.2 bits (50), Expect = 0.16
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 82  CRQRCPQRYHPGCYS 38
           C ++CP+R+ P C S
Sbjct: 106 CMRKCPRRHRPVCAS 120


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 19.0 bits (37), Expect = 5.9
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +2

Query: 95  KKNCCQDY 118
           KKNCC+ +
Sbjct: 397 KKNCCRSW 404


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 19.0 bits (37), Expect = 5.9
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +2

Query: 95  KKNCCQDY 118
           KKNCC+ +
Sbjct: 397 KKNCCRSW 404


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 18.6 bits (36), Expect = 7.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 46  SPGGSVEDIVVGMTVVEEKLLSGLL 120
           +PGGSV+D  +   ++++    GLL
Sbjct: 72  NPGGSVKD-RIAYRMIQDAEDKGLL 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,719
Number of Sequences: 438
Number of extensions: 791
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  2785926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)