Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13a19
(649 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p... 42 6e-05
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa... 30 0.33
SPAC23H4.08 |||RNA polymerase II associated protein |Schizosacch... 29 0.76
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 27 1.8
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ... 26 4.1
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 26 4.1
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 5.4
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 25 7.1
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c... 25 9.4
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom... 25 9.4
>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 42.3 bits (95), Expect = 6e-05
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Frame = -3
Query: 446 SRDPERTPFHWNPEKNAGFSTAD-KTWLPMAEGYETLNVEVQKASERSHLKVYKALSDLR 270
+RD RTP HW+ N GF+ A K W+ + Y+ N Q S + +LR
Sbjct: 435 ARDNGRTPMHWDSSPNGGFTKAGVKPWMRVTNDYKEWNAANQVNDPESPYTFWSKALELR 494
Query: 269 QE--NTFRYGRYESLA-LNQDIFVFKRWLNDVIYLVVVN 162
+E + YG +E ++ + I F R + ++++N
Sbjct: 495 KELKDAVVYGSFELISEEDPSIVAFVRESSTYKLIILLN 533
>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
Ght7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 29.9 bits (64), Expect = 0.33
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = -3
Query: 407 EKNAGFSTADKTWLPMAEGYETLNVEVQKASERSHLKVYKALSDLRQENTFRYG 246
E N +++ K W+P EGY E A+ +SH+ + ++L ENT G
Sbjct: 432 EINTMYASNLKPWMPHPEGYREFGREQNNATLKSHIGLNGETTEL-IENTDNQG 484
>SPAC23H4.08 |||RNA polymerase II associated protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 277
Score = 28.7 bits (61), Expect = 0.76
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -1
Query: 445 REIPKGLLSIGTPRKTLDSLPLTR 374
RE KG+LS +PR T+ +LP T+
Sbjct: 112 RENTKGILSFSSPRYTIQNLPSTQ 135
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 647 NHDNSRM-ATRYG-ASLVDGINMLVLLLPGVAVTYMGEEIGL 528
NHD R A G A L+ G + LL PG+ + Y G+E G+
Sbjct: 461 NHDVFRWGAIENGTARLILGTMITSLLFPGIPLLYYGDEQGM 502
>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 418 WKGVLSGSLDDSTYFIGSLVLHP 486
W S SLDD+T+ +GS V +P
Sbjct: 179 WIHSASASLDDNTHNLGSFVTNP 201
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -3
Query: 452 ESSRDPERTPFHWNPEKNAGFSTA 381
+S DP ++ FHW P+ + F+ A
Sbjct: 343 QSLSDPIKSRFHWYPKSSTRFAVA 366
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.8 bits (54), Expect = 5.4
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -3
Query: 647 NHDNSRMATRYGAS--LVDGINMLVLLLPGVAVTYMGEEIGL 528
N+D R A+ S L+ G M L PG + Y G+E GL
Sbjct: 454 NYDVFRWASVADGSRRLILGTMMTFFLFPGAPLIYYGDEQGL 495
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 596 GINMLVLLLPGVAVTYMGEEIGLE 525
G+ ++ LL+PG+ + Y GEE L+
Sbjct: 489 GLFVVHLLMPGIPLIYYGEEQNLK 512
>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 488
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -3
Query: 383 ADKTWLPMAEGYETLNVEVQKASERSHLKVYKA 285
A + LP ++ ++ E+QK E S+ +VY+A
Sbjct: 141 AQEDALPFSQFVKSQTFEIQKIGEASYSEVYQA 173
>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = -3
Query: 416 WNPEKNAGFSTADKTWLPMAEGYETLNVEVQK 321
W+P+KN G A + ++ + + +E L+ Q+
Sbjct: 34 WHPDKNPGNEEAQEKFIEINKAHEVLSDPEQR 65
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,803,616
Number of Sequences: 5004
Number of extensions: 60112
Number of successful extensions: 163
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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