Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13a19
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784     29   4.2  
07_03_1723 - 29038701-29039213,29039341-29039413,29039504-290395...    29   4.2  
03_05_0915 + 28755584-28756139,28756695-28756846,28756994-287569...    28   5.6  
06_01_1133 + 9364842-9364850,9364929-9365048,9365157-9365476,936...    27   9.7  

>09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784
          Length = 773

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
 Frame = -3

Query: 581 VLLLPGVAVTYMGEEIGLEDGYVSWEDTVDPSGCNT---NDPIKYVESSRDPERTPFHWN 411
           +LLLPG  + Y+G    L    V+      P GC T   +  I Y     DP+R    ++
Sbjct: 6   LLLLPGCLLLYLGAIATLAAADVAIPAGGQPPGCRTRCGDVDIPYPFGIIDPDRPDCAYS 65

Query: 410 PEKNAGFSTADKTWLPMAEGYETLNVEV 327
                  ++ +    PM    E  N+ V
Sbjct: 66  RGFQLNCTSVNGAARPMFHNIEVTNISV 93


>07_03_1723 - 29038701-29039213,29039341-29039413,29039504-29039594,
            29039684-29039741,29039829-29039905,29040004-29040214,
            29040339-29040386,29042496-29042608,29043270-29043341,
            29044372-29046336,29046434-29046641,29046847-29047165,
            29047813-29047937,29048024-29048157,29049089-29049164,
            29049276-29049428,29049829-29050532,29050636-29050811,
            29050945-29051107,29051199-29051341,29051802-29051914,
            29053113-29053237,29053867-29054016,29054753-29054921,
            29055201-29055418,29055499-29055709
          Length = 2135

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 491  PSGCNTNDPIKYVESSRDPERTPFHWNPEKNAGFSTADKT 372
            PSG   N   K+V+ S  P + P H  PE      ++D+T
Sbjct: 1070 PSGPQHNTLFKWVKESAGPSQGPQHKYPELPGQLKSSDQT 1109


>03_05_0915 +
           28755584-28756139,28756695-28756846,28756994-28756996,
           28757587-28757690,28758033-28758121,28758682-28758825,
           28759194-28759291,28759380-28759502,28760045-28760113,
           28760206-28760406
          Length = 512

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/64 (28%), Positives = 24/64 (37%)
 Frame = -3

Query: 566 GVAVTYMGEEIGLEDGYVSWEDTVDPSGCNTNDPIKYVESSRDPERTPFHWNPEKNAGFS 387
           GV V      +      VS ED    S C ++       ++  PE  P  W PE N G  
Sbjct: 106 GVGVELRQRSVSGSGRVVSREDAT--SSCGSSARESAAAAAAVPEAAPAAWRPEANGGGK 163

Query: 386 TADK 375
             +K
Sbjct: 164 KLEK 167


>06_01_1133 +
           9364842-9364850,9364929-9365048,9365157-9365476,
           9366267-9366428,9367151-9367235,9367352-9367501,
           9367588-9367635,9367705-9367773,9367897-9368600,
           9369426-9369561,9369636-9369856,9370355-9370486,
           9371316-9371406,9371878-9371925,9372004-9372132,
           9372357-9372626
          Length = 897

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -1

Query: 454 SNRREIPKGLLSI--GTPRKTLDSLPLTRPGCRWPRAMKL 341
           +NRR   + L+S+  G    + DS  +   GC WPR MKL
Sbjct: 416 TNRRIAERILMSVKKGQQEMSPDSNSIVN-GCHWPRDMKL 454


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,521,160
Number of Sequences: 37544
Number of extensions: 367504
Number of successful extensions: 861
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)