Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13a19
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80223-7|CAB02316.2|  613|Caenorhabditis elegans Hypothetical pr...    46   2e-05
Z93375-4|CAB07562.2|  647|Caenorhabditis elegans Hypothetical pr...    38   0.005
Z80223-8|CAN99671.1|  177|Caenorhabditis elegans Hypothetical pr...    36   0.033
U82936-1|AAB40869.1|  682|Caenorhabditis elegans protein kinase ...    29   2.1  
U82935-1|AAB40868.1|  680|Caenorhabditis elegans protein kinase ...    29   2.1  
Z30662-5|CAA83134.1|  363|Caenorhabditis elegans Hypothetical pr...    28   5.0  

>Z80223-7|CAB02316.2|  613|Caenorhabditis elegans Hypothetical
           protein F26D10.9a protein.
          Length = 613

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 13/186 (6%)
 Frame = -3

Query: 647 NHDNSRMATRYGASLVDGINMLVLLLPGVAVTYMGEEIGLEDGYVSWEDTVDPSGCNTND 468
           N + SR+A+R+ ++    ++ L L LPG    Y G+E GL+D              + N 
Sbjct: 394 NSEASRLASRFESATAHLLSFLQLTLPGANSVYYGQEYGLKD------------AMSKNG 441

Query: 467 PIKYVESSRDPERTPFHWNP--EKNAGFSTAD-KTWLPMAEG-YETLNVEVQKASERSHL 300
             K        +     W P  + + GFS  D   + P ++   E  N   Q  +E S L
Sbjct: 442 EFK--------QMGVMQWYPAGKDHHGFSGNDAPIFFPESDDKLELDNYNTQFETENSAL 493

Query: 299 KVYKALSDLRQ-ENTFRYGR-YESLALNQDIFVFKRWLNDV-------IYLVVVNMRDVE 147
           K+Y+ L+ LRQ +     G       +N+D+ +F R++  V        ++V +N  D E
Sbjct: 494 KIYRKLAKLRQRDEALIVGETVRDELINEDVILFSRYVQAVNNTATGSTFIVALNFGDKE 553

Query: 146 HNIDLT 129
             ID +
Sbjct: 554 QKIDFS 559


>Z93375-4|CAB07562.2|  647|Caenorhabditis elegans Hypothetical
           protein C38C6.2 protein.
          Length = 647

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 1/126 (0%)
 Frame = -3

Query: 641 DNSRMATRYGASLVDGINMLV-LLLPGVAVTYMGEEIGLEDGYVSWEDTVDPSGCNTNDP 465
           D +R+A+R G+     + M++ ++LPG    Y GEEIG+ +                ND 
Sbjct: 439 DLARIASRVGSRPHAQLLMVLQMILPGTNNIYYGEEIGMRN--------------LAND- 483

Query: 464 IKYVESSRDPERTPFHWNPEKNAGFSTADKTWLPMAEGYETLNVEVQKASERSHLKVYKA 285
                S   P++    W+   N GF++A    +P       +N + Q A  +S LK++  
Sbjct: 484 -----SRVPPQKGAMQWDDSLNGGFTSAISPPVPSNIDVANINWKRQYAEPQSTLKIFAK 538

Query: 284 LSDLRQ 267
           L+ LRQ
Sbjct: 539 LAKLRQ 544


>Z80223-8|CAN99671.1|  177|Caenorhabditis elegans Hypothetical
           protein F26D10.9b protein.
          Length = 177

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 13/109 (11%)
 Frame = -3

Query: 416 WNP--EKNAGFSTADKT-WLPMAEG-YETLNVEVQKASERSHLKVYKALSDLRQ-ENTFR 252
           W P  + + GFS  D   + P ++   E  N   Q  +E S LK+Y+ L+ LRQ +    
Sbjct: 15  WYPAGKDHHGFSGNDAPIFFPESDDKLELDNYNTQFETENSALKIYRKLAKLRQRDEALI 74

Query: 251 YGR-YESLALNQDIFVFKRWLNDV-------IYLVVVNMRDVEHNIDLT 129
            G       +N+D+ +F R++  V        ++V +N  D E  ID +
Sbjct: 75  VGETVRDELINEDVILFSRYVQAVNNTATGSTFIVALNFGDKEQKIDFS 123


>U82936-1|AAB40869.1|  682|Caenorhabditis elegans protein kinase C2
           B isoform protein.
          Length = 682

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 533 GLEDGYVSWEDTVDPSGCNTNDPIKYVESSRDPE 432
           GL D YV W+   + SGC +    K + ++ +P+
Sbjct: 192 GLSDPYVKWKLIPEDSGCKSKQKTKTLRATLNPQ 225


>U82935-1|AAB40868.1|  680|Caenorhabditis elegans protein kinase C2
           A isoform protein.
          Length = 680

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 533 GLEDGYVSWEDTVDPSGCNTNDPIKYVESSRDPE 432
           GL D YV W+   + SGC +    K + ++ +P+
Sbjct: 192 GLSDPYVKWKLIPEDSGCKSKQKTKTLRATLNPQ 225


>Z30662-5|CAA83134.1|  363|Caenorhabditis elegans Hypothetical
           protein T16H12.8 protein.
          Length = 363

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 447 RFDIFYWVVGITSRWVNCVFPANIAVF 527
           R  +F  ++ IT  W N VFP  +AVF
Sbjct: 104 RIMVFIGLIEITEIWGNSVFPGFVAVF 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,208,187
Number of Sequences: 27780
Number of extensions: 330775
Number of successful extensions: 873
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)