Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13a19
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...   157   1e-40
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.   151   7e-39
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...   151   7e-39
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    96   2e-22
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   1.5  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   2.5  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.5  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score =  157 bits (380), Expect = 1e-40
 Identities = 80/213 (37%), Positives = 120/213 (56%)
 Frame = -3

Query: 647 NHDNSRMATRYGASLVDGINMLVLLLPGVAVTYMGEEIGLEDGYVSWEDTVDPSGCNTND 468
           NHDN R+A+R+G    D I ML L LPG+ V Y G+EIG+ED + ++++TVDP+GCN   
Sbjct: 352 NHDNHRVASRFGRQRGDEIVMLTLTLPGIGVVYNGDEIGMEDRWFTYQETVDPAGCNAG- 410

Query: 467 PIKYVESSRDPERTPFHWNPEKNAGFSTADKTWLPMAEGYETLNVEVQKASERSHLKVYK 288
           P KY   SRDPERTP+ W+   +AGFS  +KTWLP+ E Y++LN+  QK    SH   +K
Sbjct: 411 PAKYYLKSRDPERTPYQWDNSTSAGFSQTNKTWLPVNENYKSLNLAAQKREYYSHYVAFK 470

Query: 287 ALSDLRQENTFRYGRYESLALNQDIFVFKRWLNDVIYLVVVNMRDVEHNIDLTYFENVSG 108
           +LS L+++     G  E   ++  +   KR L +   +V++N       ++LT     + 
Sbjct: 471 SLSYLKKQPVIANGSLEVDVIDGRVLSVKRELGNDTVIVMMNFSKNPVTVNLTKLHPPAD 530

Query: 107 NVAVSIRSVNSPKNEGDTFDAKSLPVVGFEGLV 9
            V  +   V S  + G+     S+ + G    V
Sbjct: 531 LVVYACNVVGSGLSHGNWIYPASMTIPGSNSAV 563


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score =  151 bits (365), Expect = 7e-39
 Identities = 75/210 (35%), Positives = 111/210 (52%), Gaps = 1/210 (0%)
 Frame = -3

Query: 647 NHDNSRMATRYGASLVDGINMLVLLLPGVAVTYMGEEIGLEDGYVSWEDTVDPSGCNTND 468
           NHD  R+ +R+G      I  + LLLPGVAV Y G+EIG+ D Y+SWEDT DP GC    
Sbjct: 346 NHDQLRLVSRFGEEKARMITTMSLLLPGVAVNYYGDEIGMSDTYISWEDTQDPQGCGAGK 405

Query: 467 PIKYVESSRDPERTPFHWNPEKNAGFSTADKTWLPMAEGYETLNVEVQKASERSHLKVYK 288
              Y   SRDP RTPF W+   +AGFS++  TWL + E Y+T+N+  +K  + S   ++K
Sbjct: 406 E-NYQTMSRDPARTPFQWDDSVSAGFSSSSNTWLRVNENYKTVNLAAEKKDKNSFFNMFK 464

Query: 287 ALSDLRQENTFRYGRYESLALNQDIFVFKRWLNDVIYL-VVVNMRDVEHNIDLTYFENVS 111
             + L++   F+     +  LN ++F F R   D   L  ++N  + E  +DL  F NV 
Sbjct: 465 KFASLKKSPYFKEANLNTRMLNDNVFAFSRETEDNGSLYAILNFSNEEQIVDLKAFNNVP 524

Query: 110 GNVAVSIRSVNSPKNEGDTFDAKSLPVVGF 21
             + +   + NS        +   +  +GF
Sbjct: 525 KKLNMFYNNFNSDIKSISNNEQVKVSALGF 554


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score =  151 bits (365), Expect = 7e-39
 Identities = 75/210 (35%), Positives = 111/210 (52%), Gaps = 1/210 (0%)
 Frame = -3

Query: 647 NHDNSRMATRYGASLVDGINMLVLLLPGVAVTYMGEEIGLEDGYVSWEDTVDPSGCNTND 468
           NHD  R+ +R+G      I  + LLLPGVAV Y G+EIG+ D Y+SWEDT DP GC    
Sbjct: 346 NHDQLRLVSRFGEEKARMITTMSLLLPGVAVNYYGDEIGMSDTYISWEDTQDPQGCGAGK 405

Query: 467 PIKYVESSRDPERTPFHWNPEKNAGFSTADKTWLPMAEGYETLNVEVQKASERSHLKVYK 288
              Y   SRDP RTPF W+   +AGFS++  TWL + E Y+T+N+  +K  + S   ++K
Sbjct: 406 E-NYQTMSRDPARTPFQWDDSVSAGFSSSSNTWLRVNENYKTVNLAAEKKDKNSFFNMFK 464

Query: 287 ALSDLRQENTFRYGRYESLALNQDIFVFKRWLNDVIYL-VVVNMRDVEHNIDLTYFENVS 111
             + L++   F+     +  LN ++F F R   D   L  ++N  + E  +DL  F NV 
Sbjct: 465 KFASLKKSPYFKEANLNTRMLNDNVFAFSRETEDNGSLYAILNFSNEEQIVDLKAFNNVP 524

Query: 110 GNVAVSIRSVNSPKNEGDTFDAKSLPVVGF 21
             + +   + NS        +   +  +GF
Sbjct: 525 KKLNMFYNNFNSDIKSISNNEQVKVSALGF 554


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 96.3 bits (229), Expect = 2e-22
 Identities = 68/220 (30%), Positives = 103/220 (46%), Gaps = 6/220 (2%)
 Frame = -3

Query: 647 NHDNSRMATRYGASLVDGINMLVLLLPGVAVTYMGEEIGLEDGYVSWEDTVDPSGCNTND 468
           NHD  R+ TRY     D + ML ++LPGVAVTY GEEIG+ D                N 
Sbjct: 359 NHDRVRVGTRYPGR-ADHMIMLEMILPGVAVTYYGEEIGMVD----------------NT 401

Query: 467 PIKYVESSRDPERTPFHWNPEKNAGFS-----TADKTWLPMAEGYET-LNVEVQKASERS 306
            I Y    RD  RTPF W+   NAGFS       +K WLP+   Y++ LN+E +K    S
Sbjct: 402 TI-YKYDVRDGCRTPFQWDNSINAGFSKIAENLLEKNWLPVHTSYKSGLNLEQEKKDSIS 460

Query: 305 HLKVYKALSDLRQENTFRYGRYESLALNQDIFVFKRWLNDVIYLVVVNMRDVEHNIDLTY 126
           H  +Y  L+ LR+ +  + G +    LN+ +    R   +    +++N       +D++ 
Sbjct: 461 HYHLYTNLTALRKRDVLKKGNFTIEILNKTVLAVVRQSEEEAVSLLINFSKNNTIVDISK 520

Query: 125 FENVSGNVAVSIRSVNSPKNEGDTFDAKSLPVVGFEGLVL 6
             N   N  +   SVNS      T +  ++ + G   +++
Sbjct: 521 LVNKRNNAKIYTSSVNSNLTVNQTVNPVAINIPGDTSIIV 560


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = +1

Query: 376 LSAVENPAFFSGFQWKGVLSGSLD 447
           +S ++   +F GF W+G+ + +L+
Sbjct: 617 ISEIQKHKWFDGFNWEGLRARTLE 640


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 369 PGLVSGRESSVFLGVPMERSPFG 437
           P  V  +E  VF G+P  + P G
Sbjct: 51  PRTVLDKEVHVFYGIPFAKPPIG 73


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 369 PGLVSGRESSVFLGVPMERSPFG 437
           P  V  +E  VF G+P  + P G
Sbjct: 51  PRTVLDKEVHVFYGIPFAKPPIG 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,996
Number of Sequences: 438
Number of extensions: 4241
Number of successful extensions: 20
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)