Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13a14
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    28   1.5  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    28   1.5  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    26   4.5  
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    26   4.5  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    26   6.0  
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    25   7.9  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    25   7.9  

>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 139  SFGAKALIVCIPFLIIWQSFVTACCWYPRKLYQ 237
            +F   A+IV IPF +++ +    C +YP K Y+
Sbjct: 1295 AFVFSAIIVEIPFNLVFGTLFFLCWFYPIKFYK 1327


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = -2

Query: 596 LERRSDWYRGSDDRSVSGLYGRNDSLHTRKETIRKEDLRVSGHQLPNRTPA---DTVGSR 426
           L RRS   R S +RS S L  R   + +   + R     VSG Q P+ + +   +   S+
Sbjct: 705 LSRRSSTLRPSFERSASSLSVRQSDVVSPAPSTRARGQSVSGQQRPSSSMSLYGEYNKSQ 764

Query: 425 PSSNIQR 405
           P  ++QR
Sbjct: 765 PQLSMQR 771


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 342 AKYLAIAASLTNSWPCSFSLAALYV 416
           + YL++AA L+  W   +SL  LY+
Sbjct: 3   SSYLSLAARLSQCWISPWSLCCLYI 27


>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 580 IGIAAQMIGLCQGCMDATIPYTLERKQFGKKIYEFQ 473
           +G+  + I LC G   ATIP  +E K    K  +F+
Sbjct: 90  LGLPNKYIALCLGSHAATIPGCMEYKMIYDKPTDFE 125


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 373  VKEAAMAKYFASEIAQTLTSKCID 302
            ++   + K FAS++ Q+L S C D
Sbjct: 1301 IRRGPLVKQFASKLLQSLKSSCFD 1324


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 584 SDWYRGSDDRSVSGLYGRND 525
           S W +G+D  S+SG+ G  D
Sbjct: 16  SGWLQGADTGSISGILGMRD 35


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +1

Query: 43  CICLK*SIG--NIFYNIK*PKCLYALKLRKINHKSFGAKALIVCI 171
           C+ LK S    N+FY IK  K LY    R I++       +I C+
Sbjct: 706 CLELKSSFNRPNLFYEIKPKKDLYTELYRFISNGHLHESGIIYCL 750


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,995,893
Number of Sequences: 5004
Number of extensions: 61704
Number of successful extensions: 188
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)