Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13a14
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   0.70 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.70 
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    22   4.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   6.5  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    21   8.6  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -1

Query: 504 NNSERRF-TSFRASATKSHTCRHSWKPP 424
           NN++  F  +    AT ++T R  WKPP
Sbjct: 115 NNADGNFEVTLATKATLNYTGRVEWKPP 142


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 483  TSFRASATKSHTCRHSWKPP 424
            TS R      HT + +WKPP
Sbjct: 981  TSIRVDDLDQHTLKVTWKPP 1000



 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 9    HLDNKSRVICPMYLFKIKHRK 71
            HL+  S   CPM  F ++H+K
Sbjct: 1480 HLNAWSDGGCPMIYFVVEHKK 1500


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 649 RAPSHCRNVPCMCPK 693
           +A  HC  V C+C K
Sbjct: 69  KAGGHCEKVGCICRK 83


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +3

Query: 318 VNVCAISEAKYLAI 359
           +N+CAIS  +YLA+
Sbjct: 154 LNLCAISLDRYLAV 167


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -1

Query: 234 VQFTRVPATCSYKRLPNY*KGNTHNKRFCSK*LMIYFP 121
           +Q   V A C  ++L    +GN +N+ F +   ++ FP
Sbjct: 48  IQSDNVFANCELQKLRLLLQGNINNQLFQTPCELLNFP 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,362
Number of Sequences: 438
Number of extensions: 4557
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)