Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13a11
(478 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 21 5.1
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 21 5.1
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 21 5.1
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 21 5.1
L10430-1|AAA27731.1| 150|Apis mellifera transposase protein. 21 6.8
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 21 6.8
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 21 6.8
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 21 9.0
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 21 9.0
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 21 9.0
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 21 9.0
AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 21 9.0
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 21 9.0
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.4 bits (43), Expect = 5.1
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 428 YDIISINLIG*PIVVPIF 375
Y+II+I I P+ VPI+
Sbjct: 325 YNIINIEQIPVPVPVPIY 342
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 5.1
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 428 YDIISINLIG*PIVVPIF 375
Y+II+I I P+ VPI+
Sbjct: 336 YNIINIEQIPVPVPVPIY 353
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 21.4 bits (43), Expect = 5.1
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 428 YDIISINLIG*PIVVPIF 375
Y+II+I I P+ VPI+
Sbjct: 354 YNIINIEQIPVPVPVPIY 371
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 21.4 bits (43), Expect = 5.1
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 428 YDIISINLIG*PIVVPIF 375
Y+II+I I P+ VPI+
Sbjct: 356 YNIINIEQIPVPVPVPIY 373
>L10430-1|AAA27731.1| 150|Apis mellifera transposase protein.
Length = 150
Score = 21.0 bits (42), Expect = 6.8
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = +1
Query: 274 VTKIKNKNNSRRFEFLGRK 330
+TK+ N +RFE RK
Sbjct: 99 LTKLNNAIEEKRFELTNRK 117
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.0 bits (42), Expect = 6.8
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -3
Query: 428 YDIISINLIG*PIVVPIF 375
Y+II+I I P+ VP++
Sbjct: 114 YNIINIEQIPVPVPVPVY 131
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.0 bits (42), Expect = 6.8
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -3
Query: 428 YDIISINLIG*PIVVPIF 375
Y+II+I I P+ VP++
Sbjct: 114 YNIINIEQIPVPVPVPVY 131
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 20.6 bits (41), Expect = 9.0
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +1
Query: 37 AMNLXHGICLDFI 75
AMN+ G+C+ FI
Sbjct: 362 AMNVWDGVCMCFI 374
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 20.6 bits (41), Expect = 9.0
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +1
Query: 37 AMNLXHGICLDFI 75
AMN+ G+C+ FI
Sbjct: 331 AMNVWDGVCMCFI 343
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 20.6 bits (41), Expect = 9.0
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +1
Query: 37 AMNLXHGICLDFI 75
AMN+ G+C+ FI
Sbjct: 382 AMNVWDGVCMCFI 394
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 20.6 bits (41), Expect = 9.0
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +1
Query: 37 AMNLXHGICLDFI 75
AMN+ G+C+ FI
Sbjct: 331 AMNVWDGVCMCFI 343
>AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera
ORF for hypotheticalprotein. ).
Length = 998
Score = 20.6 bits (41), Expect = 9.0
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = -3
Query: 182 SYYEFIKIVTLVS 144
SYY +I ++TLV+
Sbjct: 639 SYYSYIGVLTLVA 651
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 20.6 bits (41), Expect = 9.0
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -3
Query: 248 ILRVL*VKFYHFISXLYNKQLFSYY 174
+ R+ V F+ L NKQ F Y+
Sbjct: 233 LFRIPLVSFFSTSPELSNKQRFEYF 257
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,226
Number of Sequences: 438
Number of extensions: 2171
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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