Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13a09
         (704 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0703 + 6212409-6212456,6212661-6212742,6214031-6214106,621...    51   8e-07
02_01_0726 + 5440341-5440661,5441574-5441620,5442917-5442977,544...    29   2.7  
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157...    29   4.8  

>08_01_0703 +
           6212409-6212456,6212661-6212742,6214031-6214106,
           6214498-6214594,6214760-6214862,6214973-6215103,
           6215285-6215462,6215528-6215715,6215945-6216154,
           6216231-6216578,6216660-6216786,6217304-6217455
          Length = 579

 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
 Frame = -1

Query: 704 DAFFPF--RDNIXRAVQCGVEYIGSPSGSNNDQEVIEACNEHKIALAHTNLRLFHH 543
           DAFFPF   D +  A Q G+  I  PSGS  D + ++ CN++ ++L  T +R F H
Sbjct: 524 DAFFPFAWNDAVEEACQNGIGVIAEPSGSMRDGDAVDCCNKYGVSLLFTGVRHFRH 579


>02_01_0726 +
           5440341-5440661,5441574-5441620,5442917-5442977,
           5442978-5443035,5443303-5443463,5443692-5443808,
           5443888-5443989,5444834-5444908,5444996-5445084,
           5445171-5445220,5445562-5445641,5445744-5445953,
           5446103-5446170,5446363-5446423,5446719-5447081
          Length = 620

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 22/71 (30%), Positives = 32/71 (45%)
 Frame = +3

Query: 294 MMNSWQNNRFSSFVNQIQLIHYYDNRAMDVLKILC*KQ*TIFIR*VIS*IMYLGVCFFLR 473
           M N++  N+F+ F N   L+H        VLK    +     ++ V   +M LG   FL 
Sbjct: 122 MSNNFAQNKFAFFTNCCILVH-------QVLKFNGQEALFSALQRVKEELMLLGFISFLL 174

Query: 474 DILSSFINHKC 506
            +   FINH C
Sbjct: 175 SVFQKFINHIC 185


>01_07_0197 +
           41912207-41912652,41913226-41913800,41913828-41915748,
           41915836-41916049,41916143-41916394,41916469-41916528,
           41916646-41916776,41916898-41917012,41917084-41917239
          Length = 1289

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = -3

Query: 651 GIHR--QSVWFEQRSRSHRSVQRTQNSARAY*LASFPPLMQKL 529
           GIHR  ++   + RSR  + +QRT  SAR   L + PP ++K+
Sbjct: 832 GIHRPFEAQMEDGRSRLLQLLQRTMISARKQDLKNIPPCIKKI 874


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,169,228
Number of Sequences: 37544
Number of extensions: 244013
Number of successful extensions: 416
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)