Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13a09
         (704 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58747-3|AAL27233.2|  420|Caenorhabditis elegans Hypothetical pr...    75   5e-14
U58747-1|AAL27234.3|  594|Caenorhabditis elegans Hypothetical pr...    75   5e-14
Z98866-14|CAB11553.1|  524|Caenorhabditis elegans Hypothetical p...    27   9.9  

>U58747-3|AAL27233.2|  420|Caenorhabditis elegans Hypothetical
           protein C55F2.1a protein.
          Length = 420

 Score = 74.9 bits (176), Expect = 5e-14
 Identities = 32/54 (59%), Positives = 37/54 (68%)
 Frame = -1

Query: 704 DAFFPFRDNIXRAVQCGVEYIGSPSGSNNDQEVIEACNEHKIALAHTNLRLFHH 543
           DAF PFRDN+  A Q GV Y+  P GS  D ++ EAC+EH I L HT LRLFHH
Sbjct: 367 DAFLPFRDNVDCAKQFGVSYVAHPGGSVRDDDIKEACDEHGITLIHTGLRLFHH 420


>U58747-1|AAL27234.3|  594|Caenorhabditis elegans Hypothetical
           protein C55F2.1b protein.
          Length = 594

 Score = 74.9 bits (176), Expect = 5e-14
 Identities = 32/54 (59%), Positives = 37/54 (68%)
 Frame = -1

Query: 704 DAFFPFRDNIXRAVQCGVEYIGSPSGSNNDQEVIEACNEHKIALAHTNLRLFHH 543
           DAF PFRDN+  A Q GV Y+  P GS  D ++ EAC+EH I L HT LRLFHH
Sbjct: 541 DAFLPFRDNVDCAKQFGVSYVAHPGGSVRDDDIKEACDEHGITLIHTGLRLFHH 594


>Z98866-14|CAB11553.1|  524|Caenorhabditis elegans Hypothetical
           protein Y49E10.17 protein.
          Length = 524

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +2

Query: 500 QMLI*IGAINNFCINGGKDAS*YARALFC-VRCTLR*LLD-RCSNQTDCRCI 649
           Q +    A    C + G D   Y R   C V  T + ++D +CSN TDC  +
Sbjct: 217 QQMTSFDAYTEMCESLGTDFMEYRRLSACGVSQTFKSIIDAQCSNMTDCAVV 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,277,385
Number of Sequences: 27780
Number of extensions: 253817
Number of successful extensions: 447
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)