Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13a09
         (704 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.6  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   2.8  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   6.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   6.5  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   6.5  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          22   6.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 264 KNIIFDLKNGM-MNSWQNNRFSSFVNQIQLIHYYDNRAMDV 383
           KN+     NG  + S QN  F+  +N +Q++H  DNR  ++
Sbjct: 818 KNMRVLYVNGSGIESIQNRTFNG-LNNLQILHLEDNRIREL 857


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 460 VFFSVTFCHLSSITNANINWRHK*FLHQWWKRRKL 564
           V+F VT   L SI   ++ +    F  Q WK  +L
Sbjct: 63  VYFHVTVMGLDSIDENSMTYAADIFFAQTWKDNRL 97


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 460 VFFSVTFCHLSSITNANINWRHK*FLHQWWKRRKL 564
           V+F VT   + SI   ++ +    FL Q W+  +L
Sbjct: 32  VYFHVTVLSIDSINEESMTYVADIFLAQSWRDSRL 66


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +3

Query: 291 GMMNSWQNNRFSSFVNQIQLIHYYDN 368
           GM+  +   ++  F +++ L+H Y N
Sbjct: 512 GMVRIFLGPKYDEFGHEVDLVHNYMN 537


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +3

Query: 291 GMMNSWQNNRFSSFVNQIQLIHYYDN 368
           GM+  +   ++  F +++ L+H Y N
Sbjct: 512 GMVRIFLGPKYDEFGHEVDLVHNYMN 537


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 526 YGANLY*HL*LMKDDKMSRRKK 461
           YGA +  HL   + DKM + KK
Sbjct: 487 YGAGIVYHLSKAELDKMDKEKK 508


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +3

Query: 291 GMMNSWQNNRFSSFVNQIQLIHYYDN 368
           GM+  +   ++  F +++ L+H Y N
Sbjct: 138 GMVRIFLGPKYDEFGHEVDLVHNYMN 163


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +1

Query: 499 TNANINWRHK*FLHQWWKRRKLVCASA 579
           +N N NW HK   H  W+     C  A
Sbjct: 184 SNENYNWEHK-ETHIDWQPEDEECTEA 209


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -3

Query: 699 FLPVQRQHRPSCAVRRGIHRQSVWFE 622
           FLPV+      C+VR        WFE
Sbjct: 8   FLPVKSFRESRCSVRCSAASGLRWFE 33


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,359
Number of Sequences: 438
Number of extensions: 3194
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)