Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13a06
(464 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0471 + 34169562-34169892,34170121-34170347 37 0.009
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 34 0.049
02_04_0382 - 22501041-22501279,22501717-22501810 30 0.80
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 30 1.1
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 29 1.4
12_02_0959 + 24818310-24818369,24818689-24819136,24819265-248194... 28 4.3
01_05_0504 + 22781737-22781799,22782033-22782287,22783652-22784077 28 4.3
04_03_0904 + 20717005-20718087 27 5.6
03_05_0937 - 28967038-28967245,28967348-28967556,28967584-289676... 27 5.6
09_02_0417 - 8915604-8916779,8916863-8917270 27 7.4
12_01_1017 - 10348198-10348326,10348412-10348532,10348746-103492... 27 9.8
10_08_0493 + 18299885-18299892,18300201-18300837,18301254-183016... 27 9.8
09_03_0174 - 13097138-13098265 27 9.8
08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406... 27 9.8
07_01_0479 + 3606663-3607448 27 9.8
>03_06_0471 + 34169562-34169892,34170121-34170347
Length = 185
Score = 36.7 bits (81), Expect = 0.009
Identities = 31/98 (31%), Positives = 36/98 (36%), Gaps = 8/98 (8%)
Frame = -2
Query: 355 SNPDPGFSRPV-IGQPGYVPISTG----PAYVXXXXXXXXXXXNGYEPIDNRPYIVNPPK 191
SN D GF G PG P+ G P Y P P PP
Sbjct: 11 SNADKGFHGAYPSGYPGAYPLMQGYPNSPGQYPTPGGYPSAPPGQYPPAGGYPGAQYPPS 70
Query: 190 DYNPNGNGYEPIDNGAYYVDPPQG---RPYFKPTPFPG 86
Y P+ GY P GAY PP G +P + P +PG
Sbjct: 71 GYPPSQGGYPP---GAY---PPSGYPQQPGYPPAGYPG 102
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 34.3 bits (75), Expect = 0.049
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = -2
Query: 235 YEPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDPPQGRPYFKPTPFPGARG 77
Y P + P V PP Y P +G P N + Y +PP GRP P P GA G
Sbjct: 394 YAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVGRPNSGPPPSYGAGG 448
>02_04_0382 - 22501041-22501279,22501717-22501810
Length = 110
Score = 30.3 bits (65), Expect = 0.80
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -2
Query: 190 DYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFPGARGG 74
D P+ + Y+P + YY DPP Y+ P P P GG
Sbjct: 55 DPPPSPDYYDPPHSPDYY-DPPPSPDYYDPPPSPYYGGG 92
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = -2
Query: 217 RPYIVNP---PKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKP 101
+PY P P P G Y P G Y PP+G+P + P
Sbjct: 266 QPYPPKPQGQPYPPQPQGQPYPPQPYGQTYPPPPKGQPTYPP 307
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 29.5 bits (63), Expect = 1.4
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = -2
Query: 229 PIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 89
P + P IV P Y P+ YEP Y +PP PY P FP
Sbjct: 636 PYPSPPDIVPSPPSYEPSPPSYEP-SPPEYAPEPPVYAPY-PPGIFP 680
>12_02_0959 +
24818310-24818369,24818689-24819136,24819265-24819482,
24819651-24819929
Length = 334
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = +2
Query: 284 RSSTYWHVSGLTDYGPRKARIRVRDENLSVGHSQQSEDENHEEFHFYMITSY 439
++ST +SG T PRK + V + ++D+ H ++H+ +Y
Sbjct: 154 KASTSKKLSGKTKTNPRKEPEDPNCSHWHVIEEKNTDDDEHADYHYTRFANY 205
>01_05_0504 + 22781737-22781799,22782033-22782287,22783652-22784077
Length = 247
Score = 27.9 bits (59), Expect = 4.3
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Frame = +2
Query: 38 YFVINFLRYSLLPTASTRERGRLEVRSALGRVHVICTVVDRFVAVSIRVVIFGRINDVRA 217
YF I F+ + + PT + + + + L V+C+ ++ V +R +I+G DV+A
Sbjct: 80 YFFIYFIGHGVFPTVHSLMKSKKDFPKVLLISSVLCS-LNYAVTTLLRYLIYG--EDVQA 136
Query: 218 VVNRFVAVSWPLGSVVGPVYVRRSSTYWHVSGLTDYGPRKARI-RVRDENLSVGHSQQSE 394
V L G +Y R + +S L YG I V E LS+ + ++
Sbjct: 137 QVT--------LNLPSGKLYTRITILTTLISLLEKYGLEIQLIATVIKEKLSLTTAAATD 188
Query: 395 DENHEE 412
EN+ +
Sbjct: 189 AENNRQ 194
>04_03_0904 + 20717005-20718087
Length = 360
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -2
Query: 202 NPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 89
NPP Y P Y+P PP +P KPTP P
Sbjct: 237 NPPPTYKPAPPTYKPQPKPN---PPPTYKPQPKPTPTP 271
>03_05_0937 -
28967038-28967245,28967348-28967556,28967584-28967644,
28967926-28968742,28968960-28971024
Length = 1119
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = -1
Query: 149 RCILRGPSPR-PTLLQAYPFPWCSRW 75
+ I+ PSP P + A F WCS W
Sbjct: 755 KAIIHNPSPLIPPIFGADEFGWCSEW 780
>09_02_0417 - 8915604-8916779,8916863-8917270
Length = 527
Score = 27.1 bits (57), Expect = 7.4
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = -2
Query: 214 PYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTP 95
PY +N P P+ Y P Y PPQ PY P P
Sbjct: 42 PYAMNFPFPPFPH---YPPYTQNLQYAVPPQYAPYTLPPP 78
>12_01_1017 -
10348198-10348326,10348412-10348532,10348746-10349275,
10349318-10349433,10349672-10349990,10350019-10350106,
10350194-10350639
Length = 582
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 269 PVYVRRSSTYWHVSGLTDYGPRKARIRVRDE-NLSVGHSQQSEDENH 406
P++VR +ST+W+V+ L K +I++ D + ++ + +D N+
Sbjct: 496 PIFVRGNSTHWYVAVLNG---AKEKIQILDSMRMDKSYNDKDKDLNN 539
>10_08_0493 +
18299885-18299892,18300201-18300837,18301254-18301676,
18301769-18302014,18302124-18302789,18303228-18303283,
18303367-18303460,18303559-18303738
Length = 769
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/45 (28%), Positives = 18/45 (40%)
Frame = -2
Query: 235 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKP 101
+ P D P + P +++ G G DPP GRP P
Sbjct: 474 FAPFDGPPVDILPNREFMLYGRSANSPPYGGPPNDPPYGRPAIDP 518
>09_03_0174 - 13097138-13098265
Length = 375
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 278 VRRSSTYWHVSGLTDYGPRKARIRVRDENLSVGHS 382
+R SS W LT+Y P RIRV + V H+
Sbjct: 161 IRNSSGEWEDWKLTEYHPDLPRIRVSPDTNPVLHN 195
>08_01_0461 -
4063614-4064375,4064439-4066017,4066041-4066086,
4066416-4066933,4067435-4067694,4068089-4068594,
4068667-4071319
Length = 2107
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -1
Query: 176 WKRLRTYRQRCILRGPSPRPTLLQAYPFPWCSRWEVKNIL 57
W RLR R +L+ P+P P + + RW K +L
Sbjct: 836 WDRLRENSFRILLQFPTPLPGISSSTSIDSVIRWAKKLVL 875
>07_01_0479 + 3606663-3607448
Length = 261
Score = 26.6 bits (56), Expect = 9.8
Identities = 27/101 (26%), Positives = 33/101 (32%), Gaps = 6/101 (5%)
Frame = -2
Query: 358 ISNPDPGFSRPVIGQPGYVPISTGP-AYVXXXXXXXXXXXNGYEPIDNRPYIVNPPKDYN 182
+ P PG +P I +P +S P AY P P P
Sbjct: 136 VGGPAPGMMQPQISRPPMPNLSAPPVAYPQVVRPPPGQMPPPMRP-PQMPIPFQRPPGVP 194
Query: 181 PNGNGYEPIDNGAYY-----VDPPQGRPYFKPTPFPGARGG 74
P G P G + + PPQ RP P PG R G
Sbjct: 195 PAFPGGPPPPPGPFMRGPPPMGPPQVRPGMPGGPPPGMRPG 235
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,285,743
Number of Sequences: 37544
Number of extensions: 314696
Number of successful extensions: 939
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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