Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13a06
         (464 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    35   0.033
Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    33   0.13 
Z82068-3|CAB04900.2| 1071|Caenorhabditis elegans Hypothetical pr...    28   2.9  
Z74473-5|CAI79195.1|  245|Caenorhabditis elegans Hypothetical pr...    28   2.9  
U40029-3|AAA81124.1|  269|Caenorhabditis elegans Hypothetical pr...    28   3.8  
Z81044-11|CAB02809.2|  476|Caenorhabditis elegans Hypothetical p...    27   5.0  
Z75711-1|CAB00032.1|  196|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z68748-6|CAD27621.1|   88|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z72504-4|CAH60755.1|  653|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    27   6.6  
X91045-1|CAA62505.1|  693|Caenorhabditis elegans let-653 protein.      27   6.6  
AF025471-4|AAB71063.1|  151|Caenorhabditis elegans Hypothetical ...    27   6.6  
Z81520-4|CAE17808.1|  181|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
           protein T19D12.1 protein.
          Length = 1844

 Score = 34.7 bits (76), Expect = 0.033
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -3

Query: 267 PTTDPKGQETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKA 118
           PTT P    TA  + TT   +   P +TT   T   ++TT  +T T+ +A
Sbjct: 209 PTTQPLVTSTAPEVTTTVAQTTTAPIVTTANTTTQGVTTTAGVTTTVTRA 258


>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 32.7 bits (71), Expect = 0.13
 Identities = 22/59 (37%), Positives = 27/59 (45%)
 Frame = -3

Query: 279 T*TGPTTDPKGQETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSS 103
           T T PTT P    T T   TTA+T+    K TT     T  ++T   T T PK    +S
Sbjct: 272 TTTTPTTTPTTTTTPTTTTTTAKTT----KSTTTTTKTTKTTSTPTTTTTTPKTPFDTS 326


>Z82068-3|CAB04900.2| 1071|Caenorhabditis elegans Hypothetical
           protein W04A4.5 protein.
          Length = 1071

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 302 HVSGLTDYGPRKAR-IRVRDENLSVGHSQQSEDENHEEFHFYMITSYHR 445
           H   L +  P   R IRV DE   +G   +S+++ +E+    ++ +Y+R
Sbjct: 688 HYRFLRNASPNLVRPIRVLDEEKQIGRCSKSDEKTNEKAEEVVMNTYYR 736


>Z74473-5|CAI79195.1|  245|Caenorhabditis elegans Hypothetical
           protein F56H9.6 protein.
          Length = 245

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
 Frame = -3

Query: 273 TGPTTDPKGQETATNLLTTARTSLILPKITTLME------TATNLSTTVHITWTLPKADL 112
           T PT DP    T T   TT   +    ++TT  E      T T  STT   T T P    
Sbjct: 26  TSPTADPT--TTTTEATTTTEITTTTEEVTTTTEPVTTTTTPTTTSTTSTTTTTTPTTTT 83

Query: 111 TSS 103
           T++
Sbjct: 84  TTT 86



 Score = 27.1 bits (57), Expect = 6.6
 Identities = 19/55 (34%), Positives = 23/55 (41%)
 Frame = -3

Query: 288 DLRT*TGPTTDPKGQETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLP 124
           ++ T T P T      T T   TT+ T+   P  TT     T  STT   T T P
Sbjct: 51  EVTTTTEPVTT---TTTPTTTSTTSTTTTTTPTTTTTTTPTTTTSTTSTTTTTTP 102


>U40029-3|AAA81124.1|  269|Caenorhabditis elegans Hypothetical
           protein F10G7.6 protein.
          Length = 269

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -2

Query: 232 EPIDNRPYI-VNPPKDYNPNGNGYEPIDNG 146
           EP D  P + V PP  + PN NG  P  NG
Sbjct: 239 EPDDPAPPLPVAPPPLHGPNNNGNGPAQNG 268


>Z81044-11|CAB02809.2|  476|Caenorhabditis elegans Hypothetical
           protein C30H6.4 protein.
          Length = 476

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -3

Query: 273 TGPTTDPKGQETATNLLTTARTSLILPKITTLMETATNLSTTVHIT 136
           T PTT      T T + TT  ++   P  T+   T +  +TT+  T
Sbjct: 299 TEPTTSTSTPTTTTTMQTTTPSTTSTPTTTSTTTTTSASTTTISTT 344


>Z75711-1|CAB00032.1|  196|Caenorhabditis elegans Hypothetical
           protein K02B12.2 protein.
          Length = 196

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 204 LILPKITTLMETATNLSTTVHITWTLPKAD 115
           +I+   TT +++ T+LS   + TW LPK D
Sbjct: 18  VIVNHYTTHVKSTTDLSKCGNCTWVLPKLD 47


>Z68748-6|CAD27621.1|   88|Caenorhabditis elegans Hypothetical
           protein F13H10.6 protein.
          Length = 88

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = -2

Query: 235 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTP 95
           Y+P +  P     P    P   GY P   G YY    QG PY+   P
Sbjct: 3   YQPYNQPPPYTQQPGYPPPGSAGYVPQ-QGGYYPQGQQG-PYYPQQP 47


>Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical
           protein C29E6.1a protein.
          Length = 812

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -3

Query: 267 PTTDPKGQETA-TNLLTTARTSLILPKITTLMETATNLSTTVHITWTLP-KADLTSSLP 97
           PTT  +   T  T    T  T+   PK TT  ETAT  S+T  +T   P     T++LP
Sbjct: 496 PTTTVQTSTTVPTTPSKTTATTTTTPKPTT-TETATTSSSTTTVTTQKPTTVTSTTTLP 553


>Z72504-4|CAH60755.1|  653|Caenorhabditis elegans Hypothetical
           protein C29E6.1b protein.
          Length = 653

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -3

Query: 267 PTTDPKGQETA-TNLLTTARTSLILPKITTLMETATNLSTTVHITWTLP-KADLTSSLP 97
           PTT  +   T  T    T  T+   PK TT  ETAT  S+T  +T   P     T++LP
Sbjct: 337 PTTTVQTSTTVPTTPSKTTATTTTTPKPTT-TETATTSSSTTTVTTQKPTTVTSTTTLP 394


>Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical protein
            C27B7.4 protein.
          Length = 1274

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 172  NGYEPIDNGAYYVDPPQGRPYFKPTPFPGA 83
            NGY   +NG    +P Q  P   P+ FPGA
Sbjct: 1146 NGYPNNNNGGAIGNPQQMLPPRDPSAFPGA 1175


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -3

Query: 264 TTDPKGQETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTS 106
           T +P    T T + +T+ T       TTL  +  + STT   T T+  +  TS
Sbjct: 404 TEEPSTSTTTTEVTSTSSTVTTTEPTTTLTTSTASTSTTEPSTSTVTTSPSTS 456


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -3

Query: 264 TTDPKGQETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTS 106
           T +P    T T + +T+ T       TTL  +  + STT   T T+  +  TS
Sbjct: 404 TEEPSTSTTTTEVTSTSSTVTTTEPTTTLTTSTASTSTTEPSTSTVTTSPSTS 456


>X91045-1|CAA62505.1|  693|Caenorhabditis elegans let-653 protein.
          Length = 693

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -3

Query: 267 PTTDPKGQETA-TNLLTTARTSLILPKITTLMETATNLSTTVHITWTLP-KADLTSSLP 97
           PTT  +   T  T    T  T+   PK TT  ETAT  S+T  +T   P     T++LP
Sbjct: 377 PTTTVQTSTTVPTTPSKTTATTTTTPKPTT-TETATTSSSTTTVTTQKPTTVTSTTTLP 434


>AF025471-4|AAB71063.1|  151|Caenorhabditis elegans Hypothetical
           protein R52.6 protein.
          Length = 151

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 243 ETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTL 127
           E  T ++TT  TS +  K+   M  AT       + WTL
Sbjct: 51  EETTEMMTTMETSTMTEKVCPEMPAATACMDLTTLGWTL 89


>Z81520-4|CAE17808.1|  181|Caenorhabditis elegans Hypothetical
           protein F31B9.4 protein.
          Length = 181

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
 Frame = -3

Query: 267 PTTDPKGQETATNLLTTARTSLILPKITTLMETA-----TNLSTTVHITWTLPKADLTSS 103
           P+ DP    T     TT  T+   P ITT   T      TN +TT+ +T T      T+S
Sbjct: 13  PSRDPVITTTIRPNSTTTTTTSPAPNITTTTTTTTIAPPTNTTTTI-LTTTTTVTTTTTS 71

Query: 102 LPL 94
            PL
Sbjct: 72  PPL 74


>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 22/65 (33%), Positives = 28/65 (43%)
 Frame = -3

Query: 375 PTLKFSSRTRILAFLGP*SVNPDTCQ*VLDLRT*TGPTTDPKGQETATNLLTTARTSLIL 196
           P    SS T   A + P   +P T   V  + T T PTT      T T   TT +T+   
Sbjct: 653 PVNPTSSTTAPTAPVNP--TSPTTAPTVPPVTT-TTPTTTTSTTTTTTTTTTTTQTTPTT 709

Query: 195 PKITT 181
           P +TT
Sbjct: 710 PVVTT 714


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 22/65 (33%), Positives = 28/65 (43%)
 Frame = -3

Query: 375 PTLKFSSRTRILAFLGP*SVNPDTCQ*VLDLRT*TGPTTDPKGQETATNLLTTARTSLIL 196
           P    SS T   A + P   +P T   V  + T T PTT      T T   TT +T+   
Sbjct: 709 PVNPTSSTTAPTAPVNP--TSPTTAPTVPPVTT-TTPTTTTSTTTTTTTTTTTTQTTPTT 765

Query: 195 PKITT 181
           P +TT
Sbjct: 766 PVVTT 770


>U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical
           protein C12D12.1b protein.
          Length = 648

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 22/65 (33%), Positives = 28/65 (43%)
 Frame = -3

Query: 375 PTLKFSSRTRILAFLGP*SVNPDTCQ*VLDLRT*TGPTTDPKGQETATNLLTTARTSLIL 196
           P    SS T   A + P   +P T   V  + T T PTT      T T   TT +T+   
Sbjct: 532 PVNPTSSTTAPTAPVNP--TSPTTAPTVPPVTT-TTPTTTTSTTTTTTTTTTTTQTTPTT 588

Query: 195 PKITT 181
           P +TT
Sbjct: 589 PVVTT 593


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,071,697
Number of Sequences: 27780
Number of extensions: 257078
Number of successful extensions: 768
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)