Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13a05
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98877-10|CAB63406.1|  314|Caenorhabditis elegans Hypothetical p...    30   1.7  
Z81459-1|CAB03827.3|  731|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z79604-6|CAB97241.2|  731|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U40954-6|ABQ13043.1|  127|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>Z98877-10|CAB63406.1|  314|Caenorhabditis elegans Hypothetical
           protein Y69H2.9 protein.
          Length = 314

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
 Frame = +2

Query: 476 HMKPKKQNIF-----FFLKSCLCSSGTMSASNGKRIFQIGPVVWEPIRTNKQTN 622
           H+ P +   F     +FL SC CS+    ASN  + ++I    W+      Q N
Sbjct: 30  HLNPNRDRKFIDSQLYFLTSCNCSTQLALASNNLKSYKINSTQWDSYIALSQWN 83


>Z81459-1|CAB03827.3|  731|Caenorhabditis elegans Hypothetical
           protein C03H12.1 protein.
          Length = 731

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 221 YKLQ*APKIKNRNIMVYFRRDLSYAFLKFSVY 316
           +  Q A K    ++++YF RDL+Y   K+ ++
Sbjct: 367 HSTQLAEKFNQGSVLMYFTRDLNYGNAKYKMF 398


>Z79604-6|CAB97241.2|  731|Caenorhabditis elegans Hypothetical
           protein C03H12.1 protein.
          Length = 731

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 221 YKLQ*APKIKNRNIMVYFRRDLSYAFLKFSVY 316
           +  Q A K    ++++YF RDL+Y   K+ ++
Sbjct: 367 HSTQLAEKFNQGSVLMYFTRDLNYGNAKYKMF 398


>U40954-6|ABQ13043.1|  127|Caenorhabditis elegans Hypothetical
           protein ZK813.7 protein.
          Length = 127

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 487 WFHVCFNVSEAKRGRVASNTYKTSYETSHLKPS 389
           W +V   +   +  R ASN++  S+E+S LKP+
Sbjct: 31  WGYVQSRMLHHREERSASNSHSRSHESSELKPA 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,617,972
Number of Sequences: 27780
Number of extensions: 228405
Number of successful extensions: 477
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)