Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13a04
(669 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr... 44 3e-05
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 38 0.002
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 28 1.4
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 27 2.4
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 3.2
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 26 5.6
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 26 5.6
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ... 25 7.5
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 25 7.5
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 25 9.9
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch... 25 9.9
>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
2|||Manual
Length = 539
Score = 43.6 bits (98), Expect = 3e-05
Identities = 21/49 (42%), Positives = 26/49 (53%)
Frame = -2
Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAAGEAAFQFDGG 522
D I DLQ+ +IY AY IIE+YF+ E+ L P AF F G
Sbjct: 475 DMIHDLQSSGNNDIYLKAYSIIEKYFSDEDAVEDLAPETENGAFTFGNG 523
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 37.5 bits (83), Expect = 0.002
Identities = 21/60 (35%), Positives = 29/60 (48%)
Frame = -2
Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAAGEAAFQFDGGAADKEPPPFRF 489
D I + Q EIY+ AY+IIE++F E+E L P F F G + F+F
Sbjct: 475 DLIHECQNSSNSEIYQKAYNIIEKFFGEEDEIEELEPETVGDTFTF--GTTQEPAGDFQF 532
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -2
Query: 605 IEQYFAGEEEDASLVPAAGEAAFQFDGGAADKE 507
IE+ A E S VP+AG A GGAA E
Sbjct: 51 IEELIAAGNEKLSTVPSAGAVATPAAGGAAGAE 83
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 514 SAAPPSNWKAASPAAGTSDASSSSPA 591
S PPS +A+PA + ASS++PA
Sbjct: 60 SGPPPSYSNSAAPATPAASASSAAPA 85
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 26.6 bits (56), Expect = 3.2
Identities = 19/57 (33%), Positives = 23/57 (40%)
Frame = +1
Query: 421 SGAASVG*AWGQHGVGVGSAPS*KRKGGGSLSAAPPSNWKAASPAAGTSDASSSSPA 591
S A V +G H S PS G S + P S SPA G S+ +PA
Sbjct: 266 STIAEVSPMYGSHAAPYASTPS--AAVGSSRGSTPASATVPISPARGFPTTSAYNPA 320
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 337 KLGVHLL*TTNRPVFGEAVEKVFIRCLVSGAAS 435
KL + + +TN PVFG AV+ V ++S ++S
Sbjct: 158 KLSSNSIKSTNAPVFGTAVKNVTGENILSASSS 190
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 505 GSLSAAPPSNWKAASPAAGTSDASSSSPA 591
G+ S APP++ + +PA G+ S PA
Sbjct: 180 GTTSNAPPASSTSTTPATGSGGFSFGKPA 208
>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 441
Score = 25.4 bits (53), Expect = 7.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -1
Query: 456 LTPRSPHARRSRHKTSDKHFFN 391
LTP+ H +S + KHFF+
Sbjct: 177 LTPQETHKNKSFERDDQKHFFD 198
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.4 bits (53), Expect = 7.5
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +1
Query: 460 GVGVGSAPS*KRKGGGSLSAAPPSNWKAASPAAGTSDASSSSP 588
G+ G P + G S SAAPPS +P + +S+ P
Sbjct: 103 GLFAGGMPKLRHIGKSSASAAPPSAPAPPTPQSELRPPTSAPP 145
>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 462
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +1
Query: 508 SLSAAPPSNWKAASPAAGTSDAS-SSSPAKY 597
SLS PS++++ SP+ S S +S PA+Y
Sbjct: 32 SLSEINPSSFQSPSPSPFASSTSLASKPARY 62
>SPBC9B6.11c |||CCR4/nocturin family
endoribonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 502
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -1
Query: 441 PHARRS-RHKTSDKHFFNSLTEHG-SVGCLQQVYA*FYVNYF 322
PH+ + + K + N LT + ++GC+Q+V A F N++
Sbjct: 140 PHSGEALKWKNRSRMLANELTYYSPTLGCMQEVDAEFVPNFY 181
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,324,824
Number of Sequences: 5004
Number of extensions: 41918
Number of successful extensions: 125
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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