Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13a04
(669 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1062 + 8381281-8381490,8382353-8382449,8382546-8382637,838... 44 8e-05
05_01_0405 - 3191639-3192059,3192107-3192234,3192312-3192440,319... 42 3e-04
01_03_0183 + 13543833-13544051,13544161-13544257,13545616-135457... 42 4e-04
07_03_1748 - 29195037-29195427,29195552-29195679,29195810-291959... 33 0.27
01_06_1161 + 35002125-35002414,35002511-35002648,35003658-35004357 29 2.5
11_01_0242 - 1862106-1862210,1862302-1862320,1863082-1863257,186... 28 5.9
06_02_0027 - 10750322-10750585,10750992-10750997 28 5.9
10_08_0236 + 16078162-16078731 28 7.7
06_03_1207 + 28418473-28421073 28 7.7
04_01_0255 - 3395548-3396129,3396203-3397834 28 7.7
>01_01_1062 +
8381281-8381490,8382353-8382449,8382546-8382637,
8382729-8382860,8382975-8383160,8383244-8383407,
8383514-8383592,8384484-8384612,8385102-8385229,
8385348-8385711
Length = 526
Score = 44.4 bits (100), Expect = 8e-05
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 5/56 (8%)
Frame = -2
Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFAGEEED---ASLVPAAGEAAFQF--DGGAA 516
+KIE+LQ+H+ EIY+ A I+E Y+ EE+D A+ V A A F F GGAA
Sbjct: 468 EKIENLQSHDNNEIYEKAVKILEAYWMDEEDDTMGATTVAAPQGATFDFGQGGGAA 523
>05_01_0405 -
3191639-3192059,3192107-3192234,3192312-3192440,
3193538-3193616,3193716-3193879,3193968-3194153,
3194258-3194389,3194484-3194575,3195054-3195150,
3195258-3195485
Length = 551
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/63 (36%), Positives = 35/63 (55%)
Frame = -2
Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAAGEAAFQFDGGAADKEPPPFRF 489
+KIE+LQ+H+ EIY+ A ++E Y+ EE+DA +P+ A F+ G P F
Sbjct: 491 EKIENLQSHDNTEIYEKAVKMLESYWLEEEDDA--MPSGDNAQNGFNFGNQQPNVPSGGF 548
Query: 488 *LG 480
G
Sbjct: 549 NFG 551
>01_03_0183 +
13543833-13544051,13544161-13544257,13545616-13545707,
13545928-13546047,13546170-13546355,13546439-13546602,
13546691-13546769,13548256-13548387,13548560-13548687,
13548785-13549140,13549211-13549221,13549312-13549431,
13549510-13549637,13552210-13552260,13553105-13553189,
13553856-13553954,13555260-13555535
Length = 780
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = -2
Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDAS-LVPAAGEA 543
DKIEDLQ H+ +EIY A ++E Y+ E++ L+P+ E+
Sbjct: 468 DKIEDLQNHDNVEIYNKAVYVLESYWVQEDDQQPFLIPSVSES 510
>07_03_1748 -
29195037-29195427,29195552-29195679,29195810-29195938,
29196334-29196412,29196508-29196671,29196754-29196936,
29197021-29197146,29197237-29197328,29197412-29197508,
29198013-29198339
Length = 571
Score = 32.7 bits (71), Expect = 0.27
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -2
Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFAGE-EEDASLVPAAGEAAFQFDGGAADKEPP 501
DK+EDLQ + IYK+ ++E Y+ E +D +P + ++A + + D P
Sbjct: 504 DKLEDLQEVDNDAIYKLVMKLLEGYWDEEVSDDDPNLPTSNDSAETVETASEDAAQP 560
>01_06_1161 + 35002125-35002414,35002511-35002648,35003658-35004357
Length = 375
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +1
Query: 400 VFIRCLVSGAASVG*AWGQHGVGVGSAPS*KRKGGGSLSAAPPSNWKAASP-AAGTSDAS 576
+F R L+ A G + + + + + GGG+ +A PP W ++P AA + A+
Sbjct: 227 LFSRLLLPHAVGGGGSAAEEEAAIVTCLAAVISGGGAAAAPPPLIWPTSAPEAAFVASAA 286
Query: 577 SSSPA 591
SP+
Sbjct: 287 GHSPS 291
>11_01_0242 -
1862106-1862210,1862302-1862320,1863082-1863257,
1863359-1863405,1864443-1865022
Length = 308
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +1
Query: 460 GVGVGSAPS*KRKGGGSLSAAPPSNWKAASPAAGTSDASSSSP 588
G G G+ PS + G G APPS + S G SS P
Sbjct: 59 GGGYGAPPSTQPYGSGGGYGAPPSTQRPQSYGGGYGAPPSSQP 101
>06_02_0027 - 10750322-10750585,10750992-10750997
Length = 89
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +1
Query: 451 GQHGVGVGSAPS*KRKGGGSLSAAPPSNWKAASPAAGTSDASSSSPAK 594
G H G+AP+ RK S + PP +A P T+D + SPA+
Sbjct: 32 GNHSAVTGAAPAPHRKEQYSAAYRPPMPSPSAPP---TADREACSPAR 76
>10_08_0236 + 16078162-16078731
Length = 189
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/49 (36%), Positives = 22/49 (44%)
Frame = +1
Query: 421 SGAASVG*AWGQHGVGVGSAPS*KRKGGGSLSAAPPSNWKAASPAAGTS 567
+G G GQ G G GS S G GS + +NW +S AG S
Sbjct: 113 AGGGGGGGGQGQAG-GYGSTGSGSGSGSGSGYSNANNNWYGSSAGAGAS 160
>06_03_1207 + 28418473-28421073
Length = 866
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -1
Query: 201 GHEPSVRPTSNCLCNVCLQIDYVCICLLVNTIFIGFLVVNEKIKMIIVKRCCD 43
G P+V S+ + C CLL++ + L NE I +++K CCD
Sbjct: 695 GLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCD 747
>04_01_0255 - 3395548-3396129,3396203-3397834
Length = 737
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +2
Query: 359 KQPTDPCSVRLLKKCLSDVL-CLERRAWGER-GVSTGWAWG 475
K+ + CS R +KCL+D+L C+E + +R S W G
Sbjct: 562 KKESSRCSSRSRQKCLADILRCMENKRREKRPDKSDNWRLG 602
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,414,113
Number of Sequences: 37544
Number of extensions: 293666
Number of successful extensions: 1470
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1462
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -