Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13a04
(669 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC047409-1|AAH47409.1| 539|Homo sapiens karyopherin alpha 5 (im... 57 5e-08
AL132795-7|CAI20502.1| 121|Homo sapiens karyopherin alpha 5 (im... 57 5e-08
AL132795-5|CAI20500.1| 539|Homo sapiens karyopherin alpha 5 (im... 57 5e-08
AF005361-1|AAC51868.1| 536|Homo sapiens importin alpha 6 protein. 57 5e-08
BT009843-1|AAP88845.1| 536|Homo sapiens karyopherin alpha 6 (im... 57 7e-08
BC020520-1|AAH20520.1| 536|Homo sapiens karyopherin alpha 6 (im... 57 7e-08
AL445248-5|CAH71948.1| 536|Homo sapiens karyopherin alpha 6 (im... 57 7e-08
AL049795-3|CAI22056.1| 536|Homo sapiens karyopherin alpha 6 (im... 57 7e-08
AF060543-1|AAC15233.1| 536|Homo sapiens importin alpha 7 subuni... 57 7e-08
S75295-1|AAC60648.1| 538|Homo sapiens nucleoprotein interactor ... 54 6e-07
CR456743-1|CAG33024.1| 538|Homo sapiens KPNA1 protein. 54 6e-07
BT006959-1|AAP35605.1| 538|Homo sapiens karyopherin alpha 1 (im... 54 6e-07
BC090864-1|AAH90864.1| 538|Homo sapiens karyopherin alpha 1 (im... 54 6e-07
BC003009-1|AAH03009.1| 538|Homo sapiens karyopherin alpha 1 (im... 54 6e-07
BC002374-1|AAH02374.1| 538|Homo sapiens karyopherin alpha 1 (im... 54 6e-07
Y12393-1|CAA73025.1| 281|Homo sapiens SRP1-like protein protein. 52 2e-06
U93240-1|AAC25605.1| 521|Homo sapiens importin alpha 3 protein. 52 2e-06
BC034493-1|AAH34493.1| 521|Homo sapiens karyopherin alpha 4 (im... 52 2e-06
BC028691-1|AAH28691.1| 521|Homo sapiens karyopherin alpha 4 (im... 52 2e-06
AB002533-1|BAA19546.1| 521|Homo sapiens Qip1 protein. 52 2e-06
Y12394-1|CAA73026.1| 521|Homo sapiens SRP1-like protein protein. 52 2e-06
D89618-1|BAA20378.1| 521|Homo sapiens karyopherin alhph 3 protein. 52 2e-06
BC035090-1|AAH35090.1| 521|Homo sapiens karyopherin alpha 3 (im... 52 2e-06
BC024202-1|AAH24202.1| 521|Homo sapiens karyopherin alpha 3 (im... 52 2e-06
BC017355-1|AAH17355.1| 521|Homo sapiens karyopherin alpha 3 (im... 52 2e-06
AL136301-1|CAH71145.1| 521|Homo sapiens karyopherin alpha 3 (im... 52 2e-06
AL135901-3|CAI40716.1| 521|Homo sapiens karyopherin alpha 3 (im... 52 2e-06
AF034756-1|AAB87693.1| 521|Homo sapiens importin-alpha homolog ... 52 2e-06
AF005263-1|AAQ13404.1| 521|Homo sapiens importin alpha-3 subuni... 52 2e-06
AK223480-1|BAD97200.1| 521|Homo sapiens karyopherin alpha 3 var... 51 3e-06
AL135901-9|CAI40722.1| 90|Homo sapiens karyopherin alpha 3 (im... 50 1e-05
U28386-1|AAA69957.1| 529|Homo sapiens hSRP1alpha protein. 47 5e-05
U09559-1|AAA65700.1| 529|Homo sapiens Rch1 protein. 47 5e-05
BT006665-1|AAP35311.1| 529|Homo sapiens karyopherin alpha 2 (RA... 47 5e-05
BC067848-1|AAH67848.1| 529|Homo sapiens karyopherin alpha 2 (RA... 47 5e-05
BC053343-1|AAH53343.1| 529|Homo sapiens karyopherin alpha 2 (RA... 47 5e-05
BC005978-1|AAH05978.1| 529|Homo sapiens karyopherin alpha 2 (RA... 47 5e-05
AJ303086-1|CAC83080.1| 529|Homo sapiens karyopherin alpha 2 pro... 47 5e-05
AK096804-1|BAC04866.1| 212|Homo sapiens protein ( Homo sapiens ... 35 0.30
X97548-1|CAA66150.1| 835|Homo sapiens TIF1beta zinc finger prot... 32 2.1
U95040-1|AAB51517.1| 835|Homo sapiens hKAP1/TIF1B protein. 32 2.1
U78773-1|AAB37341.1| 835|Homo sapiens nuclear corepressor KAP-1... 32 2.1
BC052986-1|AAH52986.1| 753|Homo sapiens TRIM28 protein protein. 32 2.1
BC004978-1|AAH04978.1| 835|Homo sapiens tripartite motif-contai... 32 2.1
BC113818-1|AAI13819.1| 115|Homo sapiens Unknown (protein for IM... 30 8.6
>BC047409-1|AAH47409.1| 539|Homo sapiens karyopherin alpha 5
(importin alpha 6) protein.
Length = 539
Score = 57.2 bits (132), Expect = 5e-08
Identities = 26/46 (56%), Positives = 32/46 (69%)
Frame = -2
Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAAGEAAFQF 531
DKIE LQ+HE EIY+ A+D+IE YF EE+D S+VP E QF
Sbjct: 480 DKIEFLQSHENQEIYQKAFDLIEHYFGVEEDDPSIVPQVDENQQQF 525
>AL132795-7|CAI20502.1| 121|Homo sapiens karyopherin alpha 5
(importin alpha 6) protein.
Length = 121
Score = 57.2 bits (132), Expect = 5e-08
Identities = 26/46 (56%), Positives = 32/46 (69%)
Frame = -2
Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAAGEAAFQF 531
DKIE LQ+HE EIY+ A+D+IE YF EE+D S+VP E QF
Sbjct: 62 DKIEFLQSHENQEIYQKAFDLIEHYFGVEEDDPSIVPQVDENQQQF 107
>AL132795-5|CAI20500.1| 539|Homo sapiens karyopherin alpha 5
(importin alpha 6) protein.
Length = 539
Score = 57.2 bits (132), Expect = 5e-08
Identities = 26/46 (56%), Positives = 32/46 (69%)
Frame = -2
Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAAGEAAFQF 531
DKIE LQ+HE EIY+ A+D+IE YF EE+D S+VP E QF
Sbjct: 480 DKIEFLQSHENQEIYQKAFDLIEHYFGVEEDDPSIVPQVDENQQQF 525
>AF005361-1|AAC51868.1| 536|Homo sapiens importin alpha 6 protein.
Length = 536
Score = 57.2 bits (132), Expect = 5e-08
Identities = 26/46 (56%), Positives = 32/46 (69%)
Frame = -2
Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAAGEAAFQF 531
DKIE LQ+HE EIY+ A+D+IE YF EE+D S+VP E QF
Sbjct: 477 DKIEFLQSHENQEIYQKAFDLIEHYFGVEEDDPSIVPQVDENQQQF 522
>BT009843-1|AAP88845.1| 536|Homo sapiens karyopherin alpha 6
(importin alpha 7) protein.
Length = 536
Score = 56.8 bits (131), Expect = 7e-08
Identities = 25/46 (54%), Positives = 32/46 (69%)
Frame = -2
Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAAGEAAFQF 531
DKIE LQ+HE EIY+ A+D+IE YF E++D+SL P E QF
Sbjct: 477 DKIEFLQSHENQEIYQKAFDLIEHYFGVEDDDSSLAPQVDETQQQF 522
>BC020520-1|AAH20520.1| 536|Homo sapiens karyopherin alpha 6
(importin alpha 7) protein.
Length = 536
Score = 56.8 bits (131), Expect = 7e-08
Identities = 25/46 (54%), Positives = 32/46 (69%)
Frame = -2
Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAAGEAAFQF 531
DKIE LQ+HE EIY+ A+D+IE YF E++D+SL P E QF
Sbjct: 477 DKIEFLQSHENQEIYQKAFDLIEHYFGVEDDDSSLAPQVDETQQQF 522
>AL445248-5|CAH71948.1| 536|Homo sapiens karyopherin alpha 6
(importin alpha 7) protein.
Length = 536
Score = 56.8 bits (131), Expect = 7e-08
Identities = 25/46 (54%), Positives = 32/46 (69%)
Frame = -2
Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAAGEAAFQF 531
DKIE LQ+HE EIY+ A+D+IE YF E++D+SL P E QF
Sbjct: 477 DKIEFLQSHENQEIYQKAFDLIEHYFGVEDDDSSLAPQVDETQQQF 522
>AL049795-3|CAI22056.1| 536|Homo sapiens karyopherin alpha 6
(importin alpha 7) protein.
Length = 536
Score = 56.8 bits (131), Expect = 7e-08
Identities = 25/46 (54%), Positives = 32/46 (69%)
Frame = -2
Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAAGEAAFQF 531
DKIE LQ+HE EIY+ A+D+IE YF E++D+SL P E QF
Sbjct: 477 DKIEFLQSHENQEIYQKAFDLIEHYFGVEDDDSSLAPQVDETQQQF 522
>AF060543-1|AAC15233.1| 536|Homo sapiens importin alpha 7 subunit
protein.
Length = 536
Score = 56.8 bits (131), Expect = 7e-08
Identities = 25/46 (54%), Positives = 32/46 (69%)
Frame = -2
Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAAGEAAFQF 531
DKIE LQ+HE EIY+ A+D+IE YF E++D+SL P E QF
Sbjct: 477 DKIEFLQSHENQEIYQKAFDLIEHYFGVEDDDSSLAPQVDETQQQF 522
>S75295-1|AAC60648.1| 538|Homo sapiens nucleoprotein interactor 1
protein.
Length = 538
Score = 53.6 bits (123), Expect = 6e-07
Identities = 22/37 (59%), Positives = 29/37 (78%)
Frame = -2
Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVP 558
DKIE LQ+HE EIY+ A+D+IE YF E+ED+S+ P
Sbjct: 479 DKIEFLQSHENQEIYQKAFDLIEHYFGTEDEDSSIAP 515
>CR456743-1|CAG33024.1| 538|Homo sapiens KPNA1 protein.
Length = 538
Score = 53.6 bits (123), Expect = 6e-07
Identities = 22/37 (59%), Positives = 29/37 (78%)
Frame = -2
Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVP 558
DKIE LQ+HE EIY+ A+D+IE YF E+ED+S+ P
Sbjct: 479 DKIEFLQSHENQEIYQKAFDLIEHYFGTEDEDSSIAP 515
>BT006959-1|AAP35605.1| 538|Homo sapiens karyopherin alpha 1
(importin alpha 5) protein.
Length = 538
Score = 53.6 bits (123), Expect = 6e-07
Identities = 22/37 (59%), Positives = 29/37 (78%)
Frame = -2
Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVP 558
DKIE LQ+HE EIY+ A+D+IE YF E+ED+S+ P
Sbjct: 479 DKIEFLQSHENQEIYQKAFDLIEHYFGTEDEDSSIAP 515
>BC090864-1|AAH90864.1| 538|Homo sapiens karyopherin alpha 1
(importin alpha 5) protein.
Length = 538
Score = 53.6 bits (123), Expect = 6e-07
Identities = 22/37 (59%), Positives = 29/37 (78%)
Frame = -2
Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVP 558
DKIE LQ+HE EIY+ A+D+IE YF E+ED+S+ P
Sbjct: 479 DKIEFLQSHENQEIYQKAFDLIEHYFGTEDEDSSIAP 515
>BC003009-1|AAH03009.1| 538|Homo sapiens karyopherin alpha 1
(importin alpha 5) protein.
Length = 538
Score = 53.6 bits (123), Expect = 6e-07
Identities = 22/37 (59%), Positives = 29/37 (78%)
Frame = -2
Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVP 558
DKIE LQ+HE EIY+ A+D+IE YF E+ED+S+ P
Sbjct: 479 DKIEFLQSHENQEIYQKAFDLIEHYFGTEDEDSSIAP 515
>BC002374-1|AAH02374.1| 538|Homo sapiens karyopherin alpha 1
(importin alpha 5) protein.
Length = 538
Score = 53.6 bits (123), Expect = 6e-07
Identities = 22/37 (59%), Positives = 29/37 (78%)
Frame = -2
Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVP 558
DKIE LQ+HE EIY+ A+D+IE YF E+ED+S+ P
Sbjct: 479 DKIEFLQSHENQEIYQKAFDLIEHYFGTEDEDSSIAP 515
>Y12393-1|CAA73025.1| 281|Homo sapiens SRP1-like protein protein.
Length = 281
Score = 52.0 bits (119), Expect = 2e-06
Identities = 26/53 (49%), Positives = 37/53 (69%), Gaps = 3/53 (5%)
Frame = -2
Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFAGE--EEDASLVPAAGE-AAFQFDGGA 519
+KIE LQ HE +IYK+AY+II+Q+F+ + +ED SLVP A + F F+ A
Sbjct: 220 EKIEQLQNHENEDIYKLAYEIIDQFFSSDDIDEDPSLVPEAIQGGTFGFNSSA 272
>U93240-1|AAC25605.1| 521|Homo sapiens importin alpha 3 protein.
Length = 521
Score = 52.0 bits (119), Expect = 2e-06
Identities = 26/53 (49%), Positives = 37/53 (69%), Gaps = 3/53 (5%)
Frame = -2
Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFAGE--EEDASLVPAAGE-AAFQFDGGA 519
+KIE LQ HE +IYK+AY+II+Q+F+ + +ED SLVP A + F F+ A
Sbjct: 460 EKIEQLQNHENEDIYKLAYEIIDQFFSSDDIDEDPSLVPEAIQGGTFGFNSSA 512
>BC034493-1|AAH34493.1| 521|Homo sapiens karyopherin alpha 4
(importin alpha 3) protein.
Length = 521
Score = 52.0 bits (119), Expect = 2e-06
Identities = 26/53 (49%), Positives = 37/53 (69%), Gaps = 3/53 (5%)
Frame = -2
Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFAGE--EEDASLVPAAGE-AAFQFDGGA 519
+KIE LQ HE +IYK+AY+II+Q+F+ + +ED SLVP A + F F+ A
Sbjct: 460 EKIEQLQNHENEDIYKLAYEIIDQFFSSDDIDEDPSLVPEAIQGGTFGFNSSA 512
>BC028691-1|AAH28691.1| 521|Homo sapiens karyopherin alpha 4
(importin alpha 3) protein.
Length = 521
Score = 52.0 bits (119), Expect = 2e-06
Identities = 26/53 (49%), Positives = 37/53 (69%), Gaps = 3/53 (5%)
Frame = -2
Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFAGE--EEDASLVPAAGE-AAFQFDGGA 519
+KIE LQ HE +IYK+AY+II+Q+F+ + +ED SLVP A + F F+ A
Sbjct: 460 EKIEQLQNHENEDIYKLAYEIIDQFFSSDDIDEDPSLVPEAIQGGTFGFNSSA 512
>AB002533-1|BAA19546.1| 521|Homo sapiens Qip1 protein.
Length = 521
Score = 52.0 bits (119), Expect = 2e-06
Identities = 26/53 (49%), Positives = 37/53 (69%), Gaps = 3/53 (5%)
Frame = -2
Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFAGE--EEDASLVPAAGE-AAFQFDGGA 519
+KIE LQ HE +IYK+AY+II+Q+F+ + +ED SLVP A + F F+ A
Sbjct: 460 EKIEQLQNHENEDIYKLAYEIIDQFFSSDDIDEDPSLVPEAIQGGTFGFNSSA 512
>Y12394-1|CAA73026.1| 521|Homo sapiens SRP1-like protein protein.
Length = 521
Score = 51.6 bits (118), Expect = 2e-06
Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Frame = -2
Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFAGE--EEDASLVPAAGE-AAFQFDGGAADKEPPP 498
+KIE LQ HE +IYK+A++II+QYF+G+ +ED L+P A + + FD A+ +
Sbjct: 460 EKIEVLQQHENEDIYKLAFEIIDQYFSGDDIDEDPCLIPEATQGGTYNFD-PTANLQTKE 518
Query: 497 FRF 489
F F
Sbjct: 519 FNF 521
>D89618-1|BAA20378.1| 521|Homo sapiens karyopherin alhph 3 protein.
Length = 521
Score = 51.6 bits (118), Expect = 2e-06
Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Frame = -2
Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFAGE--EEDASLVPAAGE-AAFQFDGGAADKEPPP 498
+KIE LQ HE +IYK+A++II+QYF+G+ +ED L+P A + + FD A+ +
Sbjct: 460 EKIEVLQQHENEDIYKLAFEIIDQYFSGDDIDEDPCLIPEATQGGTYNFD-PTANLQTKE 518
Query: 497 FRF 489
F F
Sbjct: 519 FNF 521
>BC035090-1|AAH35090.1| 521|Homo sapiens karyopherin alpha 3
(importin alpha 4) protein.
Length = 521
Score = 51.6 bits (118), Expect = 2e-06
Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Frame = -2
Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFAGE--EEDASLVPAAGE-AAFQFDGGAADKEPPP 498
+KIE LQ HE +IYK+A++II+QYF+G+ +ED L+P A + + FD A+ +
Sbjct: 460 EKIEVLQQHENEDIYKLAFEIIDQYFSGDDIDEDPCLIPEATQGGTYNFD-PTANLQTKE 518
Query: 497 FRF 489
F F
Sbjct: 519 FNF 521
>BC024202-1|AAH24202.1| 521|Homo sapiens karyopherin alpha 3
(importin alpha 4) protein.
Length = 521
Score = 51.6 bits (118), Expect = 2e-06
Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Frame = -2
Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFAGE--EEDASLVPAAGE-AAFQFDGGAADKEPPP 498
+KIE LQ HE +IYK+A++II+QYF+G+ +ED L+P A + + FD A+ +
Sbjct: 460 EKIEVLQQHENEDIYKLAFEIIDQYFSGDDIDEDPCLIPEATQGGTYNFD-PTANLQTKE 518
Query: 497 FRF 489
F F
Sbjct: 519 FNF 521
>BC017355-1|AAH17355.1| 521|Homo sapiens karyopherin alpha 3
(importin alpha 4) protein.
Length = 521
Score = 51.6 bits (118), Expect = 2e-06
Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Frame = -2
Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFAGE--EEDASLVPAAGE-AAFQFDGGAADKEPPP 498
+KIE LQ HE +IYK+A++II+QYF+G+ +ED L+P A + + FD A+ +
Sbjct: 460 EKIEVLQQHENEDIYKLAFEIIDQYFSGDDIDEDPCLIPEATQGGTYNFD-PTANLQTKE 518
Query: 497 FRF 489
F F
Sbjct: 519 FNF 521
>AL136301-1|CAH71145.1| 521|Homo sapiens karyopherin alpha 3
(importin alpha 4) protein.
Length = 521
Score = 51.6 bits (118), Expect = 2e-06
Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Frame = -2
Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFAGE--EEDASLVPAAGE-AAFQFDGGAADKEPPP 498
+KIE LQ HE +IYK+A++II+QYF+G+ +ED L+P A + + FD A+ +
Sbjct: 460 EKIEVLQQHENEDIYKLAFEIIDQYFSGDDIDEDPCLIPEATQGGTYNFD-PTANLQTKE 518
Query: 497 FRF 489
F F
Sbjct: 519 FNF 521
>AL135901-3|CAI40716.1| 521|Homo sapiens karyopherin alpha 3
(importin alpha 4) protein.
Length = 521
Score = 51.6 bits (118), Expect = 2e-06
Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Frame = -2
Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFAGE--EEDASLVPAAGE-AAFQFDGGAADKEPPP 498
+KIE LQ HE +IYK+A++II+QYF+G+ +ED L+P A + + FD A+ +
Sbjct: 460 EKIEVLQQHENEDIYKLAFEIIDQYFSGDDIDEDPCLIPEATQGGTYNFD-PTANLQTKE 518
Query: 497 FRF 489
F F
Sbjct: 519 FNF 521
>AF034756-1|AAB87693.1| 521|Homo sapiens importin-alpha homolog
protein.
Length = 521
Score = 51.6 bits (118), Expect = 2e-06
Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Frame = -2
Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFAGE--EEDASLVPAAGE-AAFQFDGGAADKEPPP 498
+KIE LQ HE +IYK+A++II+QYF+G+ +ED L+P A + + FD A+ +
Sbjct: 460 EKIEVLQQHENEDIYKLAFEIIDQYFSGDDIDEDPCLIPEATQGGTYNFD-PTANLQTKE 518
Query: 497 FRF 489
F F
Sbjct: 519 FNF 521
>AF005263-1|AAQ13404.1| 521|Homo sapiens importin alpha-3 subunit
protein.
Length = 521
Score = 51.6 bits (118), Expect = 2e-06
Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Frame = -2
Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFAGE--EEDASLVPAAGE-AAFQFDGGAADKEPPP 498
+KIE LQ HE +IYK+A++II+QYF+G+ +ED L+P A + + FD A+ +
Sbjct: 460 EKIEVLQQHENEDIYKLAFEIIDQYFSGDDIDEDPCLIPEATQGGTYNFD-PTANLQTKE 518
Query: 497 FRF 489
F F
Sbjct: 519 FNF 521
>AK223480-1|BAD97200.1| 521|Homo sapiens karyopherin alpha 3
variant protein.
Length = 521
Score = 51.2 bits (117), Expect = 3e-06
Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 3/50 (6%)
Frame = -2
Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFAGE--EEDASLVPAAGE-AAFQFD 528
+KIE LQ HE +IYK+A++II+QYF+G+ +ED L+P A + + FD
Sbjct: 460 EKIEVLQQHENEDIYKLAFEIIDQYFSGDDIDEDPCLIPEATQGGTYNFD 509
>AL135901-9|CAI40722.1| 90|Homo sapiens karyopherin alpha 3
(importin alpha 4) protein.
Length = 90
Score = 49.6 bits (113), Expect = 1e-05
Identities = 22/41 (53%), Positives = 32/41 (78%), Gaps = 2/41 (4%)
Frame = -2
Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFAGE--EEDASLVPAA 552
+KIE LQ HE +IYK+A++II+QYF+G+ +ED L+P A
Sbjct: 46 EKIEVLQQHENEDIYKLAFEIIDQYFSGDDIDEDPCLIPEA 86
>U28386-1|AAA69957.1| 529|Homo sapiens hSRP1alpha protein.
Length = 529
Score = 47.2 bits (107), Expect = 5e-05
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = -2
Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFA-GEEEDASLVPAAGEAAFQFDGGAADKEPPPFR 492
DKIE LQ HE +YK + +IE+YF+ EEED ++VP + F D P F
Sbjct: 471 DKIEALQNHENESVYKASLSLIEKYFSVEEEEDQNVVPETTSEGYTFQ--VQDGAPGTFN 528
Query: 491 F 489
F
Sbjct: 529 F 529
>U09559-1|AAA65700.1| 529|Homo sapiens Rch1 protein.
Length = 529
Score = 47.2 bits (107), Expect = 5e-05
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = -2
Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFA-GEEEDASLVPAAGEAAFQFDGGAADKEPPPFR 492
DKIE LQ HE +YK + +IE+YF+ EEED ++VP + F D P F
Sbjct: 471 DKIEALQNHENESVYKASLSLIEKYFSVEEEEDQNVVPETTSEGYTFQ--VQDGAPGTFN 528
Query: 491 F 489
F
Sbjct: 529 F 529
>BT006665-1|AAP35311.1| 529|Homo sapiens karyopherin alpha 2 (RAG
cohort 1, importin alpha 1) protein.
Length = 529
Score = 47.2 bits (107), Expect = 5e-05
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = -2
Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFA-GEEEDASLVPAAGEAAFQFDGGAADKEPPPFR 492
DKIE LQ HE +YK + +IE+YF+ EEED ++VP + F D P F
Sbjct: 471 DKIEALQNHENESVYKASLSLIEKYFSVEEEEDQNVVPETTSEGYTFQ--VQDGAPGTFN 528
Query: 491 F 489
F
Sbjct: 529 F 529
>BC067848-1|AAH67848.1| 529|Homo sapiens karyopherin alpha 2 (RAG
cohort 1, importin alpha 1) protein.
Length = 529
Score = 47.2 bits (107), Expect = 5e-05
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = -2
Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFA-GEEEDASLVPAAGEAAFQFDGGAADKEPPPFR 492
DKIE LQ HE +YK + +IE+YF+ EEED ++VP + F D P F
Sbjct: 471 DKIEALQNHENESVYKASLSLIEKYFSVEEEEDQNVVPETTSEGYTFQ--VQDGAPGTFN 528
Query: 491 F 489
F
Sbjct: 529 F 529
>BC053343-1|AAH53343.1| 529|Homo sapiens karyopherin alpha 2 (RAG
cohort 1, importin alpha 1) protein.
Length = 529
Score = 47.2 bits (107), Expect = 5e-05
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = -2
Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFA-GEEEDASLVPAAGEAAFQFDGGAADKEPPPFR 492
DKIE LQ HE +YK + +IE+YF+ EEED ++VP + F D P F
Sbjct: 471 DKIEALQNHENESVYKASLSLIEKYFSVEEEEDQNVVPETTSEGYTFQ--VQDGAPGTFN 528
Query: 491 F 489
F
Sbjct: 529 F 529
>BC005978-1|AAH05978.1| 529|Homo sapiens karyopherin alpha 2 (RAG
cohort 1, importin alpha 1) protein.
Length = 529
Score = 47.2 bits (107), Expect = 5e-05
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = -2
Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFA-GEEEDASLVPAAGEAAFQFDGGAADKEPPPFR 492
DKIE LQ HE +YK + +IE+YF+ EEED ++VP + F D P F
Sbjct: 471 DKIEALQNHENESVYKASLSLIEKYFSVEEEEDQNVVPETTSEGYTFQ--VQDGAPGTFN 528
Query: 491 F 489
F
Sbjct: 529 F 529
>AJ303086-1|CAC83080.1| 529|Homo sapiens karyopherin alpha 2
protein.
Length = 529
Score = 47.2 bits (107), Expect = 5e-05
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = -2
Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFA-GEEEDASLVPAAGEAAFQFDGGAADKEPPPFR 492
DKIE LQ HE +YK + +IE+YF+ EEED ++VP + F D P F
Sbjct: 471 DKIEALQNHENESVYKASLSLIEKYFSVEEEEDQNVVPETTSEGYTFQ--VQDGAPGTFN 528
Query: 491 F 489
F
Sbjct: 529 F 529
>AK096804-1|BAC04866.1| 212|Homo sapiens protein ( Homo sapiens
cDNA FLJ39485 fis, clone PROST2015124. ).
Length = 212
Score = 34.7 bits (76), Expect = 0.30
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +1
Query: 427 AASVG*AWGQHGVGVGSAPS*KRKGGGSLSAAPPSNWKAASPAAGTSDA 573
A SV A GVG AP+ + +GGG + W A +P G S A
Sbjct: 28 ACSVSWAASALGVGSSGAPAVRSRGGGKMEPFTNGEWAAEAPGPGLSGA 76
>X97548-1|CAA66150.1| 835|Homo sapiens TIF1beta zinc finger protein
protein.
Length = 835
Score = 31.9 bits (69), Expect = 2.1
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +1
Query: 421 SGAASVG*AWGQHGVGVGSAPS*KRKGGGSLSAAPPSNWKAASPAAGTSDA 573
+ AA+ A G G G GSA KR S +A+ ++ A+SPA G ++A
Sbjct: 8 ASAAAASAASGSPGPGEGSAGGEKRSTAPSAAASASASAAASSPAGGGAEA 58
>U95040-1|AAB51517.1| 835|Homo sapiens hKAP1/TIF1B protein.
Length = 835
Score = 31.9 bits (69), Expect = 2.1
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +1
Query: 421 SGAASVG*AWGQHGVGVGSAPS*KRKGGGSLSAAPPSNWKAASPAAGTSDA 573
+ AA+ A G G G GSA KR S +A+ ++ A+SPA G ++A
Sbjct: 8 ASAAAASAASGSPGPGEGSAGGEKRSTAPSAAASASASAAASSPAGGGAEA 58
>U78773-1|AAB37341.1| 835|Homo sapiens nuclear corepressor KAP-1
protein.
Length = 835
Score = 31.9 bits (69), Expect = 2.1
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +1
Query: 421 SGAASVG*AWGQHGVGVGSAPS*KRKGGGSLSAAPPSNWKAASPAAGTSDA 573
+ AA+ A G G G GSA KR S +A+ ++ A+SPA G ++A
Sbjct: 8 ASAAAASAASGSPGPGEGSAGGEKRSTAPSAAASASASAAASSPAGGGAEA 58
>BC052986-1|AAH52986.1| 753|Homo sapiens TRIM28 protein protein.
Length = 753
Score = 31.9 bits (69), Expect = 2.1
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +1
Query: 421 SGAASVG*AWGQHGVGVGSAPS*KRKGGGSLSAAPPSNWKAASPAAGTSDA 573
+ AA+ A G G G GSA KR S +A+ ++ A+SPA G ++A
Sbjct: 8 ASAAAASAASGSPGPGEGSAGGEKRSTAPSAAASASASAAASSPAGGGAEA 58
>BC004978-1|AAH04978.1| 835|Homo sapiens tripartite
motif-containing 28 protein.
Length = 835
Score = 31.9 bits (69), Expect = 2.1
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +1
Query: 421 SGAASVG*AWGQHGVGVGSAPS*KRKGGGSLSAAPPSNWKAASPAAGTSDA 573
+ AA+ A G G G GSA KR S +A+ ++ A+SPA G ++A
Sbjct: 8 ASAAAASAASGSPGPGEGSAGGEKRSTAPSAAASASASAAASSPAGGGAEA 58
>BC113818-1|AAI13819.1| 115|Homo sapiens Unknown (protein for
IMAGE:40022667) protein.
Length = 115
Score = 29.9 bits (64), Expect = 8.6
Identities = 17/50 (34%), Positives = 20/50 (40%)
Frame = +1
Query: 424 GAASVG*AWGQHGVGVGSAPS*KRKGGGSLSAAPPSNWKAASPAAGTSDA 573
GA +G WG G V A + GG S A S W+ A DA
Sbjct: 42 GATGLGGCWGSPGPAVLGAGGGRGSSGGWASVAEHSPWELAGERVPALDA 91
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,778,320
Number of Sequences: 237096
Number of extensions: 1515937
Number of successful extensions: 5096
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 4544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5048
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7591280850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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