Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13a04
         (669 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41992-1|AAA83354.2|  514|Caenorhabditis elegans Importin alpha ...    46   2e-05
AF040995-1|AAB97171.1|  514|Caenorhabditis elegans importin alph...    46   2e-05
AF005266-1|AAQ13407.1|  423|Caenorhabditis elegans importin alph...    46   2e-05
U80444-4|AAB37790.1|  531|Caenorhabditis elegans Importin alpha ...    30   1.7  
AF326936-1|AAG49386.1|  531|Caenorhabditis elegans importin beta...    30   1.7  
AF040996-1|AAB97172.1|  531|Caenorhabditis elegans importin alph...    30   1.7  
AC024200-6|AAF35998.1|  314|Caenorhabditis elegans Hypothetical ...    29   2.3  
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical...    28   6.9  
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical...    28   6.9  
AF036692-6|AAB88328.1|  397|Caenorhabditis elegans Hypothetical ...    28   6.9  
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a...    27   9.1  

>U41992-1|AAA83354.2|  514|Caenorhabditis elegans Importin alpha
           family protein 3 protein.
          Length = 514

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 21/47 (44%), Positives = 33/47 (70%)
 Frame = -2

Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAAGEAAFQFD 528
           DKIE+LQ HE  +IYK+A++II+ +F+ ++E  + V  A  +AF  D
Sbjct: 453 DKIENLQNHENEDIYKLAFEIIDNFFSSDDETGN-VEGAQSSAFGGD 498


>AF040995-1|AAB97171.1|  514|Caenorhabditis elegans importin alpha 3
           protein.
          Length = 514

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 21/47 (44%), Positives = 33/47 (70%)
 Frame = -2

Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAAGEAAFQFD 528
           DKIE+LQ HE  +IYK+A++II+ +F+ ++E  + V  A  +AF  D
Sbjct: 453 DKIENLQNHENEDIYKLAFEIIDNFFSSDDETGN-VEGAQSSAFGGD 498


>AF005266-1|AAQ13407.1|  423|Caenorhabditis elegans importin alpha-3
           subunit protein.
          Length = 423

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 21/47 (44%), Positives = 33/47 (70%)
 Frame = -2

Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAAGEAAFQFD 528
           DKIE+LQ HE  +IYK+A++II+ +F+ ++E  + V  A  +AF  D
Sbjct: 362 DKIENLQNHENEDIYKLAFEIIDNFFSSDDETGN-VEGAQSSAFGGD 407


>U80444-4|AAB37790.1|  531|Caenorhabditis elegans Importin alpha
           family protein 2 protein.
          Length = 531

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = -2

Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYF----AGEEE 576
           D +E LQ  +  +IY  AY II Q+F    AGE+E
Sbjct: 483 DSLERLQESQSEQIYTQAYRIITQFFTDDDAGEKE 517


>AF326936-1|AAG49386.1|  531|Caenorhabditis elegans importin beta
           binding domain proteinprotein.
          Length = 531

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = -2

Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYF----AGEEE 576
           D +E LQ  +  +IY  AY II Q+F    AGE+E
Sbjct: 483 DSLERLQESQSEQIYTQAYRIITQFFTDDDAGEKE 517


>AF040996-1|AAB97172.1|  531|Caenorhabditis elegans importin alpha 2
           protein.
          Length = 531

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = -2

Query: 668 DKIEDLQTHEKMEIYKMAYDIIEQYF----AGEEE 576
           D +E LQ  +  +IY  AY II Q+F    AGE+E
Sbjct: 483 DSLERLQESQSEQIYTQAYRIITQFFTDDDAGEKE 517


>AC024200-6|AAF35998.1|  314|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.9 protein.
          Length = 314

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +1

Query: 391 VEKVFIRCLVSGAASVG*AWG-QHGVGVGSAPS*KRKGGGSLSAAPPSNWKAASPAAGTS 567
           V K     L  GA+S+   W    GV V +A   K K   + +AAP +   A +PA    
Sbjct: 41  VGKTISAFLEDGASSILGGWTTSDGVSVTAAKKKKNKSKKTETAAPETTQSAPAPAKAAP 100

Query: 568 DASSSSPA 591
             + ++PA
Sbjct: 101 APTVAAPA 108


>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
           protein Y57A10A.18b protein.
          Length = 1459

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 285 SLGKKFHINVKCKNNLRKTRRTLVVNNQQT 374
           SL  +F   V C NN  ++ RT + N+Q+T
Sbjct: 704 SLDHEFRETVSCVNNCLESARTALTNSQRT 733


>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
           protein Y57A10A.18a protein.
          Length = 1456

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 285 SLGKKFHINVKCKNNLRKTRRTLVVNNQQT 374
           SL  +F   V C NN  ++ RT + N+Q+T
Sbjct: 704 SLDHEFRETVSCVNNCLESARTALTNSQRT 733


>AF036692-6|AAB88328.1|  397|Caenorhabditis elegans Hypothetical
           protein C44B12.5 protein.
          Length = 397

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 472 GSAPS*KRKGGGSLSAAPPSNWKAASPAAGTSDASSSSP 588
           G+AP+      G+  AAPP+ W  A  AA T  A++ +P
Sbjct: 346 GAAPAAPSTSWGAAPAAPPT-WGGAPTAAPTWGAANDAP 383


>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 192 protein.
          Length = 2957

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +1

Query: 457 HGVGVGSAPS*KRKGGGSLSAAPPSNWKAASPAAGTSDASSSSPAKY 597
           +G+GV +AP+          +APPS  +A  PA  T   SS     Y
Sbjct: 566 YGIGVSTAPASMEPSQSVDQSAPPS--QAQIPATSTPSTSSQQQNAY 610


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,090,835
Number of Sequences: 27780
Number of extensions: 245642
Number of successful extensions: 828
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)