Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13a03
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF...    33   0.047
SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F ...    32   0.083
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    29   0.77 
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    29   0.77 
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    27   3.1  
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb...    25   9.5  
SPAC2G11.04 |||RNA-binding protein, G-patch type |Schizosaccharo...    25   9.5  

>SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF4E
           4F complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 32.7 bits (71), Expect = 0.047
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -1

Query: 651 NVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGIHGK--IGFQVHRDTMVKHSSATK 484
           N+R    +IA+WT +   +    +IG + KE LGI  K  I +  H D+    S   K
Sbjct: 181 NMRKGFYRIAVWTRNCNDKDVLEKIGLRFKEVLGISDKETIEYSAHEDSSKAGSMRAK 238


>SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F
           complex subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 218

 Score = 31.9 bits (69), Expect = 0.083
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = -1

Query: 651 NVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGI--HGKIGFQVHRDTMVKHSSATKNL 478
           N+R    ++A+WT     +   +EIG + K+ L +     I F  H D+    S+  K  
Sbjct: 156 NMRKGFYRLAVWTKSCNNREVLMEIGTRFKQVLNLPRSETIEFSAHEDSSKSGSTRAKTR 215

Query: 477 YTV 469
            +V
Sbjct: 216 MSV 218


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
 Frame = +2

Query: 137  LPTSRVAYLTTYNYVTLHTDTRA*V*YKIRLLTFYSSRGLYHVTM*DKYDYKN*TNTTSV 316
            +P ++  +   Y Y+ L  D      +K  +  FY      H  M  + +Y+N T   S+
Sbjct: 1092 VPRNKTIFRILYEYIQLSDDHTLDDFWKTPVPIFYGEPDCIHNDMKGELNYENETEGFSI 1151

Query: 317  KYNFIL-LL*LRKFSLWDVLNIF 382
                IL LL +  + + DV  +F
Sbjct: 1152 NIREILDLLSILYYGIRDVHTLF 1174


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -3

Query: 550 DTRQDW-FPSTQRH-NG*A*FCDQESIHCLVLAL 455
           D  Q+W FP TQ++ N    FC+Q   H L+LAL
Sbjct: 98  DAMQNWIFPQTQQYRNYQKEFCEQALFHNLLLAL 131


>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 83  INMSVKHIIPVSSR*FHNLPTSRVAYLTTYNYVTLHTDTRA 205
           IN +++H IPV      N P+S   +LT      +   TRA
Sbjct: 271 INSAIQHPIPVLPPYAKNQPSSHSVFLTKKEQKKIRRQTRA 311


>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = -2

Query: 548 YTARLVSKYTE---TQWLSIVLRPRIYT-LFSFGITYLVCICRFMGRT 417
           Y    ++KY E   T +L +  +P  +   +  GIT L+C  + +GRT
Sbjct: 137 YYLNYLTKYLELMDTVFLFLKKKPLAFLHCYHHGITALLCFTQLLGRT 184


>SPAC2G11.04 |||RNA-binding protein, G-patch type
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 301

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 17  KHFKKKKQLSVC*THTIQKRANINM 91
           K  KKKK +S   + TIQK AN N+
Sbjct: 71  KTHKKKKSVSSYLSSTIQKNANENI 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,378,863
Number of Sequences: 5004
Number of extensions: 44736
Number of successful extensions: 86
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)