Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13a03
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0331 + 42804385-42804659,42806175-42806340,42806424-428065...    48   6e-06
10_08_0323 + 16743358-16743566,16744536-16744704,16744834-167449...    39   0.003
04_01_0556 - 7156851-7157096,7157288-7157530,7158112-7158153,715...    32   0.46 
12_02_1228 - 27190983-27191291,27191442-27191675,27191994-271922...    29   4.2  
04_04_0089 - 22724971-22725035,22725403-22725466,22725602-227256...    28   5.6  

>01_07_0331 +
           42804385-42804659,42806175-42806340,42806424-42806549,
           42807142-42807207,42807645-42807698,42808843-42809019,
           42809100-42809102
          Length = 288

 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 24/56 (42%), Positives = 34/56 (60%)
 Frame = -1

Query: 651 NVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGIHGKIGFQVHRDTMVKHSSATK 484
           +VR K ++IAIWT +A  + A I IGK+ KE L     IGF VH D + K+   ++
Sbjct: 168 SVRGKQERIAIWTKNAANEAAQISIGKQWKEFLDYKDSIGFIVHWDILSKYEDMSE 223


>10_08_0323 +
           16743358-16743566,16744536-16744704,16744834-16744959,
           16745813-16745878,16745997-16746047
          Length = 206

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = -1

Query: 651 NVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGIHGKIGFQVHRD 514
           +VR + DK+A+WT  A  +   + IGKK KE +  + K+ +  H D
Sbjct: 147 SVRQRGDKLALWTRTASNEAVQVNIGKKWKEIVDYNDKMVYSFHDD 192


>04_01_0556 -
           7156851-7157096,7157288-7157530,7158112-7158153,
           7158324-7158425,7159209-7159342,7161071-7161131,
           7161192-7161284,7161557-7161639,7161984-7162239
          Length = 419

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -1

Query: 630 KIAIWTADAMKQHATIEIGKKLKEQLGIHGKIGFQVHRDTMVKHSSATK 484
           ++A WT  A+K     + G  L    G+       VHR   VKH +A+K
Sbjct: 180 RVAFWTHQALKPLKQADKGSGLYAVYGLCKSYSISVHRPFHVKHPNASK 228


>12_02_1228 -
           27190983-27191291,27191442-27191675,27191994-27192269,
           27192420-27192696,27192985-27193283,27193341-27193454,
           27193909-27194118,27194567-27194699,27194941-27195221
          Length = 710

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +2

Query: 311 SVKYNFILLL*LRKFSLWDVLNIFYSIKLNYF 406
           +V +N IL+  LR FSL  +L +F  + LNYF
Sbjct: 84  AVVFNRILVFSLRIFSLAAILCVFGILPLNYF 115


>04_04_0089 -
           22724971-22725035,22725403-22725466,22725602-22725688,
           22726775-22726789,22736269-22736685,22738235-22738473,
           22739673-22740223,22740440-22740540
          Length = 512

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 40  IKCMLNAYNTKACKHQHEC*TYYTSFLTIIS 132
           I   + +   K+C  QHEC  +Y S+L  +S
Sbjct: 457 ILLFVTSIGAKSCNKQHECHCHYLSYLPPVS 487


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,649,823
Number of Sequences: 37544
Number of extensions: 233685
Number of successful extensions: 380
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)