Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13a03
         (651 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M15353-1|AAC13647.1|  217|Homo sapiens cap-binding protein protein.    61   4e-09
BC107715-1|AAI07716.1|  217|Homo sapiens eukaryotic translation ...    61   4e-09
BC043226-1|AAH43226.1|  217|Homo sapiens eukaryotic translation ...    61   4e-09
BC035166-1|AAH35166.1|  217|Homo sapiens eukaryotic translation ...    61   4e-09
BC012611-1|AAH12611.1|  217|Homo sapiens eukaryotic translation ...    61   4e-09

>M15353-1|AAC13647.1|  217|Homo sapiens cap-binding protein protein.
          Length = 217

 Score = 60.9 bits (141), Expect = 4e-09
 Identities = 31/63 (49%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
 Frame = -1

Query: 651 NVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGIHGK--IGFQVHRDTMVKHSSATKNL 478
           NVR K DKIAIWT +   + A   IG+  KE+LG+  K  IG+Q H DT  K  S TKN 
Sbjct: 155 NVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKNR 214

Query: 477 YTV 469
           + V
Sbjct: 215 FVV 217


>BC107715-1|AAI07716.1|  217|Homo sapiens eukaryotic translation
           initiation factor 4E protein.
          Length = 217

 Score = 60.9 bits (141), Expect = 4e-09
 Identities = 31/63 (49%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
 Frame = -1

Query: 651 NVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGIHGK--IGFQVHRDTMVKHSSATKNL 478
           NVR K DKIAIWT +   + A   IG+  KE+LG+  K  IG+Q H DT  K  S TKN 
Sbjct: 155 NVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKNR 214

Query: 477 YTV 469
           + V
Sbjct: 215 FVV 217


>BC043226-1|AAH43226.1|  217|Homo sapiens eukaryotic translation
           initiation factor 4E protein.
          Length = 217

 Score = 60.9 bits (141), Expect = 4e-09
 Identities = 31/63 (49%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
 Frame = -1

Query: 651 NVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGIHGK--IGFQVHRDTMVKHSSATKNL 478
           NVR K DKIAIWT +   + A   IG+  KE+LG+  K  IG+Q H DT  K  S TKN 
Sbjct: 155 NVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKNR 214

Query: 477 YTV 469
           + V
Sbjct: 215 FVV 217


>BC035166-1|AAH35166.1|  217|Homo sapiens eukaryotic translation
           initiation factor 4E protein.
          Length = 217

 Score = 60.9 bits (141), Expect = 4e-09
 Identities = 31/63 (49%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
 Frame = -1

Query: 651 NVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGIHGK--IGFQVHRDTMVKHSSATKNL 478
           NVR K DKIAIWT +   + A   IG+  KE+LG+  K  IG+Q H DT  K  S TKN 
Sbjct: 155 NVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKNR 214

Query: 477 YTV 469
           + V
Sbjct: 215 FVV 217


>BC012611-1|AAH12611.1|  217|Homo sapiens eukaryotic translation
           initiation factor 4E protein.
          Length = 217

 Score = 60.9 bits (141), Expect = 4e-09
 Identities = 31/63 (49%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
 Frame = -1

Query: 651 NVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGIHGK--IGFQVHRDTMVKHSSATKNL 478
           NVR K DKIAIWT +   + A   IG+  KE+LG+  K  IG+Q H DT  K  S TKN 
Sbjct: 155 NVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKNR 214

Query: 477 YTV 469
           + V
Sbjct: 215 FVV 217


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,302,892
Number of Sequences: 237096
Number of extensions: 1460544
Number of successful extensions: 1951
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1946
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)