Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13a03
(651 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF068714-4|AAK68676.1| 251|Caenorhabditis elegans Initiation fa... 48 4e-06
AF068714-3|AAM22022.1| 250|Caenorhabditis elegans Initiation fa... 48 4e-06
AF068714-2|AAC17807.1| 248|Caenorhabditis elegans Initiation fa... 48 4e-06
AL117195-24|CAB55035.1| 201|Caenorhabditis elegans Hypothetical... 33 0.13
AL117195-23|CAB60769.1| 240|Caenorhabditis elegans Hypothetical... 33 0.13
AF214652-1|AAF62415.1| 201|Caenorhabditis elegans translation i... 33 0.13
Z81546-5|CAB04454.2| 212|Caenorhabditis elegans Hypothetical pr... 33 0.18
U41550-3|AAA83286.1| 228|Caenorhabditis elegans Initiation fact... 31 0.71
AL132876-5|CAC48119.1| 576|Caenorhabditis elegans Hypothetical ... 29 2.2
>AF068714-4|AAK68676.1| 251|Caenorhabditis elegans Initiation
factor 4e (eif4e) familyprotein 3, isoform b protein.
Length = 251
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Frame = -1
Query: 651 NVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGIHGK--IGFQVHRDTMVKHSSATK 484
NVR K DK+++WT DA + + IG+ LK++L I + ++VH+D+ + SS K
Sbjct: 153 NVRQKGDKVSLWTRDATRDDVNLRIGQVLKQKLSIPDTEILRYEVHKDSSARTSSTVK 210
>AF068714-3|AAM22022.1| 250|Caenorhabditis elegans Initiation
factor 4e (eif4e) familyprotein 3, isoform c protein.
Length = 250
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Frame = -1
Query: 651 NVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGIHGK--IGFQVHRDTMVKHSSATK 484
NVR K DK+++WT DA + + IG+ LK++L I + ++VH+D+ + SS K
Sbjct: 152 NVRQKGDKVSLWTRDATRDDVNLRIGQVLKQKLSIPDTEILRYEVHKDSSARTSSTVK 209
>AF068714-2|AAC17807.1| 248|Caenorhabditis elegans Initiation
factor 4e (eif4e) familyprotein 3, isoform a protein.
Length = 248
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Frame = -1
Query: 651 NVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGIHGK--IGFQVHRDTMVKHSSATK 484
NVR K DK+++WT DA + + IG+ LK++L I + ++VH+D+ + SS K
Sbjct: 150 NVRQKGDKVSLWTRDATRDDVNLRIGQVLKQKLSIPDTEILRYEVHKDSSARTSSTVK 207
>AL117195-24|CAB55035.1| 201|Caenorhabditis elegans Hypothetical
protein Y57A10A.30b protein.
Length = 201
Score = 33.5 bits (73), Expect = 0.13
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Frame = -1
Query: 651 NVRPKVDKIAIWTADAMKQHATIEIGKKLKEQL-----GIHGK-----IGFQVHRDTMVK 502
NVR + KI++WT + + IG LKE+L H K I +Q HR+ + K
Sbjct: 127 NVRGQGSKISVWTKNCNDDDTNMRIGVVLKEKLMAAASKAHSKPLFDVIHYQTHRNCVKK 186
Query: 501 HSSATKNLYTV 469
+SA K +++
Sbjct: 187 TTSALKYKFSL 197
>AL117195-23|CAB60769.1| 240|Caenorhabditis elegans Hypothetical
protein Y57A10A.30a protein.
Length = 240
Score = 33.5 bits (73), Expect = 0.13
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Frame = -1
Query: 651 NVRPKVDKIAIWTADAMKQHATIEIGKKLKEQL-----GIHGK-----IGFQVHRDTMVK 502
NVR + KI++WT + + IG LKE+L H K I +Q HR+ + K
Sbjct: 166 NVRGQGSKISVWTKNCNDDDTNMRIGVVLKEKLMAAASKAHSKPLFDVIHYQTHRNCVKK 225
Query: 501 HSSATKNLYTV 469
+SA K +++
Sbjct: 226 TTSALKYKFSL 236
>AF214652-1|AAF62415.1| 201|Caenorhabditis elegans translation
initiation factor eIF4Eisoform 5 protein.
Length = 201
Score = 33.5 bits (73), Expect = 0.13
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Frame = -1
Query: 651 NVRPKVDKIAIWTADAMKQHATIEIGKKLKEQL-----GIHGK-----IGFQVHRDTMVK 502
NVR + KI++WT + + IG LKE+L H K I +Q HR+ + K
Sbjct: 127 NVRGQGSKISVWTKNCNDDDTNMRIGVVLKEKLMAAASKAHSKPLFDVIHYQTHRNCVKK 186
Query: 501 HSSATKNLYTV 469
+SA K +++
Sbjct: 187 TTSALKYKFSL 197
>Z81546-5|CAB04454.2| 212|Caenorhabditis elegans Hypothetical
protein F53A2.6 protein.
Length = 212
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -1
Query: 651 NVRPKVDKIAIWTADAMKQHATIEIGKKLKEQL 553
NVR K KI++WT D + IG LKE+L
Sbjct: 130 NVRGKGSKISVWTKDCNDDETNMRIGVVLKEKL 162
>U41550-3|AAA83286.1| 228|Caenorhabditis elegans Initiation factor
4e (eif4e) familyprotein 2 protein.
Length = 228
Score = 31.1 bits (67), Expect = 0.71
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -1
Query: 651 NVRPKVDKIAIWTADAMKQHATIEIGKKLKEQL 553
NVR K KI++WT ++ A + IG LK+ L
Sbjct: 135 NVRGKGSKISVWTTNSADDGANLRIGGVLKQVL 167
>AL132876-5|CAC48119.1| 576|Caenorhabditis elegans Hypothetical
protein Y105E8A.5 protein.
Length = 576
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 447 KICNAKTKQCIDSWSQNYA*PLCLCVLGNQSCRVSLAVLSVFS 575
KI N+ T CI +++ A PL + V+G + C + L F+
Sbjct: 180 KIANSATITCIAKLTKSTAEPLDILVIGTEHCEIFLIDSQAFT 222
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,872,981
Number of Sequences: 27780
Number of extensions: 244141
Number of successful extensions: 495
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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