Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13a02
         (541 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    29   0.58 
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    28   1.0  
SPAC29E6.04 |nnf1|SPAC30.08|kinetochore protein Nnf1|Schizosacch...    26   3.1  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    26   4.1  
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    25   9.5  
SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1 |Schizosa...    25   9.5  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    25   9.5  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    25   9.5  
SPAC22H10.06c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   9.5  

>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 19/72 (26%), Positives = 31/72 (43%)
 Frame = -2

Query: 267 KYALPNLPTPQHVLEDASDSEILNLTYSFKLQTDDEALQNAYSCFQNCKQLEADSVKQND 88
           K+ LP  PT   +  +  +  +   + S    T DEA+      FQ     E + V  ND
Sbjct: 456 KFQLPPRPTSNTLPLEPEEELVTRYSVSSDGNTVDEAITKQSQTFQLVNSNEFNEVNAND 515

Query: 87  LNIKLQELNKKL 52
           ++  L++   KL
Sbjct: 516 VHKSLRQNCAKL 527


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 159  ALQNAYSCFQNCKQLEADSVKQNDLNIKLQELNKKL 52
            A  N YSCF +   LE   +KQ + N +  ++ K +
Sbjct: 1386 AAMNMYSCFLDLFLLEVSDLKQTECNAQSDKIIKSI 1421


>SPAC29E6.04 |nnf1|SPAC30.08|kinetochore protein
           Nnf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -2

Query: 132 QNCKQLEADSVKQNDLNIKLQELNK 58
           ++CKQ  A+ +K+ DLN KL  L++
Sbjct: 54  KSCKQEYANLIKERDLNKKLDMLDE 78


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 6/81 (7%)
 Frame = -2

Query: 276 KMDKYALPNLPTPQHVLEDASDSEILNLTYSFKLQTDDEALQNAYS-----CFQNCKQLE 112
           K+D    P LP P H        E L  +  F  +     +  AYS      F+ C  L 
Sbjct: 278 KLDYAPAPKLPPPSHEESYNPPEEYLKQSSDFPKKYKSLRVVPAYSNLIKEKFERCLDLY 337

Query: 111 -ADSVKQNDLNIKLQELNKKL 52
            A  V++  LNI  + L  KL
Sbjct: 338 LAPRVRRTKLNIDPESLLPKL 358


>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 282 TSKMDKYALPNLPTP 238
           +SKM K++LP+ PTP
Sbjct: 268 SSKMPKHSLPSSPTP 282


>SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 153 QNAYSCFQNCKQLEADSVKQNDLNIKLQELNKKL 52
           Q+AYS  +N  +L  ++   ++LN KLQ  N +L
Sbjct: 13  QDAYSVRENENELHINNSGMSELNKKLQLPNVEL 46


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 156 LQNAYSCFQNCKQLEADSVK-QNDLNIKLQELNKK 55
           L+ + S   +   LE+ + K +NDLN+  ++LNKK
Sbjct: 735 LEKSKSLNNSLAALESKNKKLENDLNLLTEKLNKK 769


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/61 (22%), Positives = 29/61 (47%)
 Frame = -2

Query: 183 FKLQTDDEALQNAYSCFQNCKQLEADSVKQNDLNIKLQELNKKLLESIANMKAQTK*NNI 4
           F++QT  +  +          QLE  +V  N  + +++ L  +L ++  N++ Q   N+ 
Sbjct: 406 FQMQTQGQLAELEQQLLATRGQLEQSNVLLNQYDARVRTLENELSQAGVNLQEQIHQNDD 465

Query: 3   L 1
           L
Sbjct: 466 L 466


>SPAC22H10.06c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 93

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 409 NQKNELLTLYSIGSHKTLRN 468
           NQ NE++ LY    HK + N
Sbjct: 33  NQTNEVIGLYKANEHKFMNN 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,070,828
Number of Sequences: 5004
Number of extensions: 40033
Number of successful extensions: 106
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)