Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13a02
         (541 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025716-1|AAK39606.1|  788|Caenorhabditis elegans Hypothetical ...    27   6.5  
U97403-9|AAB52469.1|  389|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U80439-7|AAB37644.1|  344|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U29244-10|AAC71091.2|  908|Caenorhabditis elegans Hypothetical p...    27   8.6  

>AC025716-1|AAK39606.1|  788|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.11 protein.
          Length = 788

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
 Frame = -2

Query: 237 QHVLEDASDSEILNLTYSFKLQTDDEALQNAYSCFQNCKQ------LEADSVKQNDLNIK 76
           ++V  +A   +ILN T + +   + E L+N  + F+  K       + AD     +  +K
Sbjct: 169 ENVKLEAQKEDILNHTKNSEKMWN-ERLENITADFERLKSSSKPSGIRADQKMFQENEMK 227

Query: 75  LQELNKKLLESI 40
           +QELN+KL +++
Sbjct: 228 IQELNRKLKDAL 239


>U97403-9|AAB52469.1|  389|Caenorhabditis elegans Hypothetical
           protein T10E9.1 protein.
          Length = 389

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -2

Query: 138 CFQNCKQLEADSVKQNDLNIKLQELNKKLLESIANMKAQTK*NNI 4
           CFQN   +   +V+ +D     +ELN K +E++ NM++  K  +I
Sbjct: 116 CFQNNVVIGFLTVELSD---NFEELNNKFMETLDNMESSLKVQSI 157


>U80439-7|AAB37644.1|  344|Caenorhabditis elegans Hypothetical
           protein C01G8.6 protein.
          Length = 344

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -2

Query: 255 PNLPTPQHV-LEDASDSEILNLTYSFKLQTDDEALQNAYSCFQNC 124
           P++ T   V     SD E LNL  S  L  DD+   N+ + F +C
Sbjct: 64  PSISTESSVTFSSISDFEDLNLRCSTPLVCDDDTNSNSDASFASC 108


>U29244-10|AAC71091.2|  908|Caenorhabditis elegans Hypothetical
           protein ZK1248.10 protein.
          Length = 908

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 167 MMKHCRTHILVFKTVNSWKQIQSNKTI*ILNFKSLTK 57
           + K C  H+L  KT+ +  Q  S     I++FKSL +
Sbjct: 840 LFKICEPHVLQCKTIGTVHQCLSKAQEHIIDFKSLAQ 876


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,185,653
Number of Sequences: 27780
Number of extensions: 215669
Number of successful extensions: 608
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)