Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13a02
         (541 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.6  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   4.6  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   4.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   4.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   6.1  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 156 LQNAYSCFQNCKQLEADSVKQNDLNIKLQELNKKL 52
           LQNA  C +N   +    +K     +K +ELN K+
Sbjct: 481 LQNACFCARNELMMILKEIKIITDQLKSEELNAKV 515


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -2

Query: 234 HVLEDASDSEILNLTYSFKLQTDDEALQNAYSCFQNCK 121
           H  + +SDS I     S  LQ  D      + C  +CK
Sbjct: 311 HQKDGSSDSVIKRTVVSSYLQLQDLLGDFEHPCVMDCK 348


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -2

Query: 234 HVLEDASDSEILNLTYSFKLQTDDEALQNAYSCFQNCK 121
           H  + +SDS I     S  LQ  D      + C  +CK
Sbjct: 226 HQKDGSSDSVIKRTVVSSYLQLQDLLGDFEHPCVMDCK 263



 Score = 21.4 bits (43), Expect = 6.1
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -2

Query: 222 DASDSEILNLTYSFKLQTDDEALQNAYSCFQNCKQLEADSVKQN 91
           D+ DS+    TY+  L +D  +  N Y    +C     D  ++N
Sbjct: 79  DSMDSQNSASTYNSFLSSDSASSGNVYCKCDDCLLGIVDDYQRN 122


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -2

Query: 234 HVLEDASDSEILNLTYSFKLQTDDEALQNAYSCFQNCK 121
           H  + +SDS I     S  LQ  D      + C  +CK
Sbjct: 545 HQKDGSSDSVIKRTVVSSYLQLQDLLGDFEHPCVMDCK 582


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 292 YFKQEQNQIVFKISADPLRLVYESTIIK 375
           YF+Q  N++ F ++     + Y+ TII+
Sbjct: 48  YFEQTLNELNFNLNYVNKGVTYKHTIIE 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,781
Number of Sequences: 438
Number of extensions: 2574
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)