Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13a01
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    30   0.29 
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    28   1.2  
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    26   3.6  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   4.7  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    25   8.3  
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    25   8.3  

>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 375 SAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKSVGW 518
           S  TT+ S   +    S ST   PQTFP+SG +   ++    +   GW
Sbjct: 457 STSTTNPSATPTTGDPSNSTYGGPQTFPNSGNNPNFNRGIAGIVPPGW 504


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
 Frame = +3

Query: 357 VASRRPSAGTTD----TSKQLSCSPGSPSTSPKP---QTFPDSGRSSLADKATGEMKSVG 515
           V S+R S G        SK++  + GS +T+PKP   ++ P     SL +  + EM    
Sbjct: 591 VESKRLSTGVQKQSPAASKEIPVTSGSQTTAPKPSPWKSLPPKHLPSLDETISREMSIAS 650

Query: 516 WTSLXDADETN 548
             +L   +++N
Sbjct: 651 SEALPQVEKSN 661


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +3

Query: 336 EVWPSSLVASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKS 509
           EV+PSS++   RP   +   S ++   P   ++S  PQ +  +  S L+  AT  + S
Sbjct: 82  EVFPSSVMPQLRPLDSSLSVSPEMDGWPWHHNSSSNPQGYAWT-PSLLSSNATSYLHS 138


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +3

Query: 363 SRRPSAG--TTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKSVGWTSLXDA 536
           S + S+G  T+D  ++ + S  S + SP   +  ++ R +++  +TG++   G TS    
Sbjct: 2   SNQSSSGSNTSDLDEESASSLVSSAASPFIDSDLETPRPNISRASTGQLAEDGDTSSQHE 61

Query: 537 DETNGIRR 560
           D +  ++R
Sbjct: 62  DSSEELKR 69


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 360 ASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKAT 494
           +S  P   +  TS  +  +   P+TSP P T      SS+   +T
Sbjct: 94  SSSTPITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILSNST 138


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 203 GGGLDPFDVFRDRHEGSS 256
           G G+DPFD+ R    G S
Sbjct: 423 GAGMDPFDILRAYQAGGS 440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,811,428
Number of Sequences: 5004
Number of extensions: 32387
Number of successful extensions: 124
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)